Browse Element(s) Details


OsAffx.16940.2.S1_s_at

Description tigr:9630.m02596
TID=OsAffx.16940.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1080011/11hypothetical protein
LOC_Os02g2737011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10770NANA8+6322550..6327493retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10780Os.52707.1.S1_at10/118+6327947..6333275BED zinc finger family protein, expressed
LOC_Os08g10790OsAffx.828.1.S1_x_at1/118+6348644..6349823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10800OsAffx.16940.2.S1_s_at11/118+6352433..6352978hypothetical protein
LOC_Os08g10800OsAffx.16940.1.S1_at11/118+6352433..6352978hypothetical protein
LOC_Os08g10810NANA8+6359655..6362183hypothetical protein
LOC_Os08g10820OsAffx.16941.1.S1_at11/118+6365310..6365803hypothetical protein
LOC_Os08g10830Os.53142.1.S1_at1/118+6368348..6371095retrotransposon protein, putative, unclassified
LOC_Os08g10840Os.53142.1.S1_at1/118+6376325..6377192transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16940.2.S1_s_at--1033--5814Chr08:13470815..13470839 (25 bp)
GACCCGAGAACGACTAGATCTGGCC
NONE
OsAffx.16940.2.S1_s_at--1138--4194Chr08:13470817..13470841 (25 bp)
CCCGAGAACGACTAGATCTGGCCAT
NONE
OsAffx.16940.2.S1_s_at--466--3994Chr08:13470819..13470843 (25 bp)
CGAGAACGACTAGATCTGGCCATAA
NONE
OsAffx.16940.2.S1_s_at--600--5974Chr08:13470820..13470844 (25 bp)
GAGAACGACTAGATCTGGCCATAAA
NONE
OsAffx.16940.2.S1_s_at--770--5454Chr08:13470822..13470846 (25 bp)
GAACGACTAGATCTGGCCATAAAAA
NONE
OsAffx.16940.2.S1_s_at--218--1853Chr08:13470824..13470848 (25 bp)
ACGACTAGATCTGGCCATAAAAACC
NONE
OsAffx.16940.2.S1_s_at--929--3673Chr08:13470828..13470852 (25 bp)
CTAGATCTGGCCATAAAAACCCCAA
NONE
OsAffx.16940.2.S1_s_at--261--6393Chr08:13470831..13470855 (25 bp)
GATCTGGCCATAAAAACCCCAAATA
NONE
OsAffx.16940.2.S1_s_at--953--5273Chr08:13470863..13470887 (25 bp)
GAATGAGCTAGAACATTGCATGCAG
NONE
OsAffx.16940.2.S1_s_at--639--8913Chr08:13470866..13470890 (25 bp)
TGAGCTAGAACATTGCATGCAGAGT
NONE
OsAffx.16940.2.S1_s_at--785--4853Chr08:13470869..13470893 (25 bp)
GCTAGAACATTGCATGCAGAGTCTT
NONE
Target Sequence 
GACCCGAGAACGACTAGATCTGGCCATAAAAACCCCAAATAAACGTTTGAATGAGCTAGAACATTGCATGCAGAGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16940.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis