Browse Element(s) Details


OsAffx.16941.1.S1_at

Description tigr:9636.m01047
TID=OsAffx.16941.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1082011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10790OsAffx.828.1.S1_x_at1/118+6348644..6349823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10800OsAffx.16940.2.S1_s_at11/118+6352433..6352978hypothetical protein
LOC_Os08g10800OsAffx.16940.1.S1_at11/118+6352433..6352978hypothetical protein
LOC_Os08g10810NANA8+6359655..6362183hypothetical protein
LOC_Os08g10820OsAffx.16941.1.S1_at11/118+6365310..6365803hypothetical protein
LOC_Os08g10830Os.53142.1.S1_at1/118+6368348..6371095retrotransposon protein, putative, unclassified
LOC_Os08g10840Os.53142.1.S1_at1/118+6376325..6377192transposon protein, putative, unclassified
LOC_Os08g10850OsAffx.5782.1.S1_at10/118+6381444..6384669hypothetical protein
LOC_Os08g10860OsAffx.16942.1.S1_at11/118+6386831..6387838hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16941.1.S1_at--821--3131Chr08:6365341..6365365 (25 bp)
AATTGAGCCCTTCACTTAGGTCCCT
LOC_Os08g10820
OsAffx.16941.1.S1_at--232--7152Chr08:6365360..6365384 (25 bp)
GTCCCTGGTAGGGATTGAACCCTTG
LOC_Os08g10820
OsAffx.16941.1.S1_at--912--6911Chr08:6365394..6365418 (25 bp)
GTATGCTTGAAGATCAGCCTGCTAT
LOC_Os08g10820
OsAffx.16941.1.S1_at--1128--4871Chr08:6365414..6365503 (25 bp)
GCTATTGTTGCATCAGGGTGTCCAG
LOC_Os08g10820
OsAffx.16941.1.S1_at--913--7711Chr08:6365494..6365518 (25 bp)
GGGTGTCCAGCCTCATCGTGAGAAA
LOC_Os08g10820
OsAffx.16941.1.S1_at--915--7371Chr08:6365511..6365535 (25 bp)
GTGAGAAACCCAAGTCCCGAGAGGA
LOC_Os08g10820
OsAffx.16941.1.S1_at--552--5471Chr08:6365534..6365558 (25 bp)
GAACTCGAGCGCCACCAGTTGGAAG
LOC_Os08g10820
OsAffx.16941.1.S1_at--692--5391Chr08:6365555..6365579 (25 bp)
GAAGCAGGAGGCATCCCACTTGATC
LOC_Os08g10820
OsAffx.16941.1.S1_at--91--1111Chr08:6365607..6365631 (25 bp)
AGTGTACGTCGTGCGGTGCTTGCCA
LOC_Os08g10820
OsAffx.16941.1.S1_at--95--1651Chr08:6365631..6365655 (25 bp)
AGCGATTCTCATTGGCACTGTGCCA
LOC_Os08g10820
OsAffx.16941.1.S1_at--625--5371Chr08:6365657..6365681 (25 bp)
GAAGAACCACCGGTGCTGTGCCGTG
LOC_Os08g10820
Target Sequence 
AATTGAGCCCTTCACTTAGGTCCCTGGTAGGGATTGAACCCTTGGAAGCGAAAGTATGCTTGAAGATCAGCCTGCTATTG
TTGCATCAGGGTGTCCAGCCTCATCGTGAGAAACCCAAGTCCCGAGAGGAACTCGAGCGCCACCAGTTGGAAGCAGGAGG
CATCCCACTTGATCCAGAGGAACGGGTGTGCGCGTTCCCCCAGTGTACGTCGTGCGGTGCTTGCCAGCGATTCTCATTGG
CACTGTGCCAGGAAGAACCACCGGTGCTGTGCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16941.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis