Browse Element(s) Details


OsAffx.5782.1.S1_at

Description tigr:9636.m01050
TID=OsAffx.5782.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1085010/11hypothetical protein
LOC_Os04g159301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g229701/11hypothetical protein
LOC_Os04g130801/11hypothetical protein
LOC_Os12g249201/11Transposable element protein, putative, Retrotrans_gag
LOC_Os01g320441/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10810NANA8+6359655..6362183hypothetical protein
LOC_Os08g10820OsAffx.16941.1.S1_at11/118+6365310..6365803hypothetical protein
LOC_Os08g10830Os.53142.1.S1_at1/118+6368348..6371095retrotransposon protein, putative, unclassified
LOC_Os08g10840Os.53142.1.S1_at1/118+6376325..6377192transposon protein, putative, unclassified
LOC_Os08g10850OsAffx.5782.1.S1_at10/118+6381444..6384669hypothetical protein
LOC_Os08g10860OsAffx.16942.1.S1_at11/118+6386831..6387838hypothetical protein
LOC_Os08g10870OsAffx.29141.1.S1_at9/118+6393537..6397410hypothetical protein
LOC_Os08g10870OsAffx.14850.1.S1_x_at4/118+6393537..6397410hypothetical protein
LOC_Os08g10870Os.24478.1.S1_at3/118+6393537..6397410hypothetical protein
LOC_Os08g10880OsAffx.29142.1.S1_at11/118+6405533..6406820hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5782.1.S1_at--643--4711NONE
GCTGGACATGGACACCGTTGCATAC
NONE
OsAffx.5782.1.S1_at--1136--6611Chr08:6381901..6381925 (25 bp)
GTTGTTTCGTTGAAGCTAACCGGTG
LOC_Os08g10850
OsAffx.5782.1.S1_at--339--9811Chr08:6381885..6381909 (25 bp)
TAACCGGTGGGTAGAACTTCTTGCT
LOC_Os08g10850
OsAffx.5782.1.S1_at--34--4179Chr07:12955589..12955892 (25 bp)
CGCCGAGTTAGTCCATTCTTATTTG
LOC_Os07g22970
OsAffx.5782.1.S1_at--346--5451Chr08:6381820..6381844 (25 bp)
GAACGAGGCGATGGTTGTCCCGTCT
LOC_Os08g10850
OsAffx.5782.1.S1_at--264--7971Chr08:6381785..6381809 (25 bp)
GGATCTGGCTCTTCATCGGGAACGA
LOC_Os08g10850
OsAffx.5782.1.S1_at--423--5451Chr08:6381766..6381790 (25 bp)
GAACGACCACCGACATATCGATGGA
LOC_Os08g10850
OsAffx.5782.1.S1_at--471--8191Chr08:6381744..6381768 (25 bp)
GGAAGACACCGACATACCGACAAGC
LOC_Os08g10850
OsAffx.5782.1.S1_at--642--2631Chr08:6381704..6381728 (25 bp)
AACCTCAACCTTATCGGTGATCAGG
LOC_Os08g10850
OsAffx.5782.1.S1_at--713--2171Chr08:6381637..6381661 (25 bp)
ACACTCGGGCGTACGATCCGGAACT
LOC_Os08g10850
OsAffx.5782.1.S1_at--1004--3411Chr08:6381481..6381505 (25 bp)
CAGAAGATGGCATATCCTTTCTTTT
LOC_Os08g10850
Target Sequence 
GCTGGACATGGACACCGTTGCATACACAAGTTGTTTCGTTGAAGCTAACCGGTGGGTAGAACTTCTTGCTATCCTAACCC
CCGCCGAGTTAGTCCATTCTTATTTGTGCAGAACGAGGCGATGGTTGTCCCGTCTGTTCAAGAAGGGATCTGGCTCTTCA
TCGGGAACGACCACCGACATATCGATGGAAGACACCGACATACCGACAAGCCTCTTGACCGACACCAACCTCAACCTTAT
CGGTGATCAGGAATTACAAGCCTACCATATGCTGAAGGACCGGAAGTTCAGCCACACTCGGGCGTACGATCCGGAACTTC
TGAGGAAAACAGGTATGGATAGTGATTTTCATGCCATTTGGAATGCTGTAATTTGGCAGAGATTTGCAGTAGTAGATGAA
CCAGGTTCTCATTTGCTTAATATACAATTTCTGTGCACTTTGAAAGAATCAGAAGATGGCATATCCTTTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis