Browse Element(s) Details


OsAffx.29142.1.S1_at

Description tigr:9636.m01053
TID=OsAffx.29142.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1088011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10850OsAffx.5782.1.S1_at10/118+6381444..6384669hypothetical protein
LOC_Os08g10860OsAffx.16942.1.S1_at11/118+6386831..6387838hypothetical protein
LOC_Os08g10870OsAffx.29141.1.S1_at9/118+6393537..6397410hypothetical protein
LOC_Os08g10870OsAffx.14850.1.S1_x_at4/118+6393537..6397410hypothetical protein
LOC_Os08g10870Os.24478.1.S1_at3/118+6393537..6397410hypothetical protein
LOC_Os08g10880OsAffx.29142.1.S1_at11/118+6405533..6406820hypothetical protein
LOC_Os08g10890OsAffx.11259.1.S1_at2/118+6410015..6416679hypothetical protein
LOC_Os08g10890OsAffx.8338.1.S1_x_at1/118+6410015..6416679hypothetical protein
LOC_Os08g10900OsAffx.26082.3.S1_at4/118+6421284..6422336retrotransposon protein, putative, unclassified
LOC_Os08g10910OsAffx.16943.1.S1_at11/118+6423835..6424284hypothetical protein
LOC_Os08g10920Os.52039.1.S1_at11/118+6425934..6427816retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29142.1.S1_at--596--9931Chr08:6406317..6406341 (25 bp)
TACGGAGACTACAGCGCACGCGTTT
LOC_Os08g10880
OsAffx.29142.1.S1_at--111--4891Chr08:6406286..6406310 (25 bp)
GCTTTGTGCTTAGCCTGCTTCAGGA
LOC_Os08g10880
OsAffx.29142.1.S1_at--1079--9631Chr08:6406267..6406291 (25 bp)
TCAGGAGCATGGCTGCGACCATATT
LOC_Os08g10880
OsAffx.29142.1.S1_at--590--7571Chr08:6406217..6406241 (25 bp)
GGGCTTGGCTCGAGAATTCCCAGTG
LOC_Os08g10880
OsAffx.29142.1.S1_at--848--3191Chr08:6406141..6406165 (25 bp)
CAAGGATTGCACGAAGACCCGGCTT
LOC_Os08g10880
OsAffx.29142.1.S1_at--1144--10071Chr08:6406051..6406075 (25 bp)
TAGGCCGTCGGAGCCAAGCGATGAA
LOC_Os08g10880
OsAffx.29142.1.S1_at--987--2651Chr08:6406036..6406060 (25 bp)
AAGCGATGAAGACCGAGACCACCCT
LOC_Os08g10880
OsAffx.29142.1.S1_at--1023--5511Chr08:6405753..6405777 (25 bp)
GAAAAATATGCGATCGGCCTCCCTC
LOC_Os08g10880
OsAffx.29142.1.S1_at--975--4511Chr08:6405656..6405680 (25 bp)
GCCCGTTTACCACGAGATGTTAATA
LOC_Os08g10880
OsAffx.29142.1.S1_at--120--3291Chr08:6405585..6405609 (25 bp)
CACACCCAGGTCGAACTTTAGAGGA
LOC_Os08g10880
OsAffx.29142.1.S1_at--64--10051Chr08:6405567..6405591 (25 bp)
TAGAGGACTATGACCGTTATCGTGT
LOC_Os08g10880
Target Sequence 
TACGGAGACTACAGCGCACGCGTTTCAGCGGGCTTTGTGCTTAGCCTGCTTCAGGAGCATGGCTGCGACCATATTAAAGA
TTTTCCTGAGCTATTGAAGGGGGCTTGGCTCGAGAATTCCCAGTGCTCCGGGGCGGCCTTGAGGGCCTTCCAAAAGGACT
TCTGGGAGGATGGCGGCAAGGATTGCACGAAGACCCGGCTTCGCGAACAACTTGAAAAATTGACGAAGGATAAGGAAGCC
GCTGCCACCAACCCCAGGGTGGACCCTAGGCCGTCGGAGCCAAGCGATGAAGACCGAGACCACCCTGAGGTTTGCGGCCG
AAAAATATGCGATCGGCCTCCCTCTGGGGATTGGCGAGATAAAAATGAGAAATTCATGGTGGTGAAGGGTTTTCCGACGA
CCAAGTTTCCTTTTCGGCCCGTTTACCACGAGATGTTAATAAACGGCAACAGCTACAAGGTTATAAGTGTTGCCAGATGG
ATGCGCGCACACCCAGGTCGAACTTTAGAGGACTATGACCGTTATCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis