Browse Element(s) Details


Os.52039.1.S1_at

Description gb:AK064592.1
DB_XREF= gi:32974610
TID=Os.52039.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52039 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-G06, full insert sequence.
FL= gb:AK064592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1092011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os09g033801/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10880OsAffx.29142.1.S1_at11/118+6405533..6406820hypothetical protein
LOC_Os08g10890OsAffx.11259.1.S1_at2/118+6410015..6416679hypothetical protein
LOC_Os08g10890OsAffx.8338.1.S1_x_at1/118+6410015..6416679hypothetical protein
LOC_Os08g10900OsAffx.26082.3.S1_at4/118+6421284..6422336retrotransposon protein, putative, unclassified
LOC_Os08g10910OsAffx.16943.1.S1_at11/118+6423835..6424284hypothetical protein
LOC_Os08g10920Os.52039.1.S1_at11/118+6425934..6427816retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10930OsAffx.16944.1.S1_at11/118+6433164..6437794hypothetical protein
LOC_Os08g10940OsAffx.20650.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.32036.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.3521.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.30387.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10950OsAffx.1436.1.S1_x_at1/118+6451147..6452565hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52039.1.S1_at--463--892Chr08:6428756..6428780 (25 bp)
AGGCCTCCTCTGAAGACTCAAGACT
NONE
Os.52039.1.S1_at--341--9711Chr08:6426488..6426512 (25 bp)
TCAAGACTGCCACAACCACAGGAAG
LOC_Os08g10920
Os.52039.1.S1_at--20--5432Chr08:6426467..6426491 (25 bp)
GAAGCCTGACGATCATGAACTGGAC
LOC_Os08g10920
Os.52039.1.S1_at--1125--8172Chr08:6428692..6428716 (25 bp)
GGAAGACTGCCGATCAAACCGCTGA
NONE
Os.52039.1.S1_at--114--2712Chr08:6428546..6428570 (25 bp)
AAGCATCGGCCCAAGACGTCGGAGG
NONE
Os.52039.1.S1_at--505--4851Chr08:6426267..6426291 (25 bp)
GCTACTTCGGCAATCAGTGGGCCAA
LOC_Os08g10920
Os.52039.1.S1_at--107--1111Chr08:6426252..6426276 (25 bp)
AGTGGGCCAAGTAGCCAAGCTGTCA
LOC_Os08g10920
Os.52039.1.S1_at--471--5991Chr08:6426216..6426240 (25 bp)
GAGAGCCGTGTGGTGTTGTCCTAAC
LOC_Os08g10920
Os.52039.1.S1_at--978--3911Chr08:6426130..6426154 (25 bp)
CGGCGGCAGAACGATCCTGTGGATC
LOC_Os08g10920
Os.52039.1.S1_at--726--6911Chr08:6426098..6426122 (25 bp)
GTATGCGTGAACAATTGTCCAGTAA
LOC_Os08g10920
Os.52039.1.S1_at--1106--1072Chr09:1662749..1662773 (25 bp)
AGGGCATCATGTACTCAGGTGGAGC
LOC_Os09g03380
Target Sequence 
AGGCCTCCTCTGAAGACTCAAGACTGCCACAACCACAGGAAGCCTGACGATCATGAACTGGACGGGAAGACTGCCGATCA
AACCGCTGATGAACAAGACGATGGCACGGTGGAAGGAATCCAGGAGGAGGGACAAGGCGCTGGAGAAGCAGAACAAGATG
CTGGAGGCGAGGAGGGGATCGTGCCGATACAGGAAACGGCGCCAAGCATCGGCCCAAGACGTCGGAGGCCCAACCCACGC
TACTTCGGCAATCAGTGGGCCAAGTAGCCAAGCTGTCATGTGAGAGAGGGAGAGCCGTGTGGTGTTGTCCTAACTGTATA
TAAAAAACATAGGTGGATGTTAGAAGGTGATTAACTGGATACGTGGTGGCGTAGGCGGCGGCAGAACGATCCTGTGGATC
GATACTTGTATGCGTGAACAATTGTCCAGTAAATTTGAGGGAGAAATCGTTAGAGTACCTAACATAGGGCATCATGTACT
CAGGTGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis