Browse Element(s) Details


OsAffx.16944.1.S1_at

Description tigr:9636.m01058
TID=OsAffx.16944.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1093011/11hypothetical protein
LOC_Os09g172701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10890OsAffx.11259.1.S1_at2/118+6410015..6416679hypothetical protein
LOC_Os08g10890OsAffx.8338.1.S1_x_at1/118+6410015..6416679hypothetical protein
LOC_Os08g10900OsAffx.26082.3.S1_at4/118+6421284..6422336retrotransposon protein, putative, unclassified
LOC_Os08g10910OsAffx.16943.1.S1_at11/118+6423835..6424284hypothetical protein
LOC_Os08g10920Os.52039.1.S1_at11/118+6425934..6427816retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10930OsAffx.16944.1.S1_at11/118+6433164..6437794hypothetical protein
LOC_Os08g10940OsAffx.20650.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.32036.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.3521.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.30387.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10950OsAffx.1436.1.S1_x_at1/118+6451147..6452565hypothetical protein
LOC_Os08g10960NANA8+6456655..6457917Zinc knuckle family protein
LOC_Os08g10970OsAffx.16945.1.S1_at10/118+6460601..6462049hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16944.1.S1_at--514--5371Chr08:6433805..6433829 (25 bp)
GAAGACAGTTTTCGGCTGCGTCAAC
LOC_Os08g10930
OsAffx.16944.1.S1_at--1039--4251Chr08:6433747..6433771 (25 bp)
CCGGTGCCTGCGTCTATGGTGAAGT
LOC_Os08g10930
OsAffx.16944.1.S1_at--498--6311Chr08:6433666..6433690 (25 bp)
GATGACAAGGCGAACTGGCTCCGTT
LOC_Os08g10930
OsAffx.16944.1.S1_at--735--2551Chr08:6433654..6433678 (25 bp)
AACTGGCTCCGTTTTTGGCGTCTTG
LOC_Os08g10930
OsAffx.16944.1.S1_at--645--9572Chr09:10584585..10584605 (21 bp)
TCTTGCCGTCTCCATTGTCGTGAAG
LOC_Os09g17270
OsAffx.16944.1.S1_at--348--7891Chr08:6433556..6433580 (25 bp)
GGTTCTGCGGCGATTAAGTACCCAC
LOC_Os08g10930
OsAffx.16944.1.S1_at--65--2371Chr08:6433545..6433569 (25 bp)
GATTAAGTACCCACGACCTTTGCGA
LOC_Os08g10930
OsAffx.16944.1.S1_at--99--7951Chr08:6433339..6433440 (25 bp)
GGACCGAACTTCGTACTACTGCCGA
LOC_Os08g10930
OsAffx.16944.1.S1_at--383--3731Chr08:6433288..6433312 (25 bp)
CTGACGGTCAGGTGAACCGGGTTCA
LOC_Os08g10930
OsAffx.16944.1.S1_at--174--871Chr08:6433264..6433288 (25 bp)
ATGGCGGCGAATTGGCCAACCGATC
LOC_Os08g10930
OsAffx.16944.1.S1_at--1070--9291Chr08:6433237..6433261 (25 bp)
TCCCTTCCAAGGCTGGCGACGACGA
LOC_Os08g10930
Target Sequence 
GAAGACAGTTTTCGGCTGCGTCAACTTCATGCTTCGGCCGGAGCGTTCGGACGCCTGGCCGGTGCCTGCGTCTATGGTGA
AGTGGGAGTGGAACTGGATGCAGAAGTGGTTCTACATCAACAATCCTTACCCCGCCGAGGATGACAAGGCGAACTGGCTC
CGTTTTTGGCGTCTTGCCGTCTCCATTGTCGTGAAGCCGAACGTGGAGATCGATGGCACCCTCGAGTCCCGGCTCATCCT
CCTTCGCAAGGTTCTGCGGCGATTAAGTACCCACGACCTTTGCGAGGAGTTTTGCCTTCTTCGGATTTCCCCCCTTGCTT
GCGACTGGGGGGTTTCCATCAACAAGGGCGAGGTGGTGCTTGGGCTTCCTCGCCTTGTTCTCCCCGCCGGGACCGAACTT
CGTACTACTGCCGAATTCGCCCGCCTGCTTCAGCGCCAGGCTGACGGTCAGGTGAACCGGGTTCATGGCGGCGAATTGGC
CAACCGATCGATCCCTTCCAAGGCTGGCGACGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis