Browse Element(s) Details


OsAffx.16945.1.S1_at

Description tigr:9636.m01063
TID=OsAffx.16945.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1097010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10930OsAffx.16944.1.S1_at11/118+6433164..6437794hypothetical protein
LOC_Os08g10940OsAffx.20650.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.32036.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.3521.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.30387.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10950OsAffx.1436.1.S1_x_at1/118+6451147..6452565hypothetical protein
LOC_Os08g10960NANA8+6456655..6457917Zinc knuckle family protein
LOC_Os08g10970OsAffx.16945.1.S1_at10/118+6460601..6462049hypothetical protein
LOC_Os08g10980OsAffx.5784.1.S1_at11/118+6469261..6470496hypothetical protein
LOC_Os08g10980OsAffx.3813.1.S1_at1/118+6469261..6470496hypothetical protein
LOC_Os08g10990NANA8+6471113..6474013retrotransposon protein, putative, unclassified
LOC_Os08g11000Os.53142.1.S1_at2/118+6474510..6476468retrotransposon protein, putative, unclassified
LOC_Os08g11000OsAffx.199.1.S1_at1/118+6474510..6476468retrotransposon protein, putative, unclassified
LOC_Os08g11010Os.53142.1.S1_at2/118+6481581..6484393retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11020NANA8+6485562..6487053retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16945.1.S1_at--813--491Chr08:6460128..6460384 (25 bp)
ATCGGCTGAGTTCCCTGAGATCTGG
NONE
OsAffx.16945.1.S1_at--75--6051Chr08:6460998..6461021 (24 bp)
GAGATCTGGCTCAACTTGATTACCA
LOC_Os08g10970
OsAffx.16945.1.S1_at--422--6631Chr08:6461027..6461051 (25 bp)
GTTGTCGATCGACCATCTTTAACAG
LOC_Os08g10970
OsAffx.16945.1.S1_at--329--1431Chr08:6461050..6461074 (25 bp)
AGAAGAAGACTTCCCAAGGTTTGAG
LOC_Os08g10970
OsAffx.16945.1.S1_at--571--7871Chr08:6461207..6461231 (25 bp)
GGTTTCCCGAAGAACGCTAGAGTCT
LOC_Os08g10970
OsAffx.16945.1.S1_at--672--3711Chr08:6461223..6461247 (25 bp)
CTAGAGTCTGGTTCGCATATGCTGA
LOC_Os08g10970
OsAffx.16945.1.S1_at--880--611Chr08:6461241..6461265 (25 bp)
ATGCTGATTCGGCTAGCTTTCAACT
LOC_Os08g10970
OsAffx.16945.1.S1_at--577--10011Chr08:6461254..6461278 (25 bp)
TAGCTTTCAACTTCCTTCGGATTTT
LOC_Os08g10970
OsAffx.16945.1.S1_at--1142--2271Chr08:6461321..6461345 (25 bp)
AAAGTCTTTACTATAGCCATCACCC
LOC_Os08g10970
OsAffx.16945.1.S1_at--897--371Chr08:6461406..6461430 (25 bp)
ATCACCCAATGAGTGCTGCAAAGCA
LOC_Os08g10970
OsAffx.16945.1.S1_at--1061--1951Chr08:6461446..6461470 (25 bp)
ACTGTCGATTGGGTTGTACTTTGCC
LOC_Os08g10970
Target Sequence 
ATCGGCTGAGTTCCCTGAGATCTGGCTCAACTTGATTACCAAGGAAGTTGTCGATCGACCATCTTTAACAGAAGAAGACT
TCCCAAGGTTTGAGCTGATCACGGATGAGGATGGTGAAGAAGTCACCCACCGCCGATGCATGTCCTTTGGAGAGGCAGCA
TCAAGGAACACCGGGGCCAAGCTATCTGCTGAACTGCTCAAGGACTGCTTTTGCAACTTTTATGATGGTTTCCCGAAGAA
CGCTAGAGTCTGGTTCGCATATGCTGATTCGGCTAGCTTTCAACTTCCTTCGGATTTTAGATTTGATGAGATCAACTCTG
AGAAGTTTGAGAAATCCAGAAAAGTCTTTACTATAGCCATCACCCCCTGCATACTTCTAGTCGGCATCCATCAGGGCAAA
AACATCCAGATATCTTATGAGTTTTATCACCCAATGAGTGCTGCAAAGCAACTTGGATTGGGACAACTGTCGATTGGGTT
GTACTTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis