Browse Element(s) Details


OsAffx.3813.1.S1_at

Description tigr:9632.m01567
TID=OsAffx.3813.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1736010/11hypothetical protein
LOC_Os07g208601/11hypothetical protein
LOC_Os04g163901/11hypothetical protein
LOC_Os08g109801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g17300OsAffx.5954.3.S1_x_at2/114+9459300..9460481Zinc knuckle family protein
LOC_Os04g17300OsAffx.5954.2.S1_at1/114+9459300..9460481Zinc knuckle family protein
LOC_Os04g17310NANA4+9461477..9461686hypothetical protein
LOC_Os04g17320OsAffx.30294.1.S1_at6/114+9463597..9470190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g17320OsAffx.5954.1.S1_x_at4/114+9463597..9470190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g17320OsAffx.5954.5.S1_x_at4/114+9463597..9470190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g17330OsAffx.3812.1.S1_at11/114+9471977..9472383hypothetical protein
LOC_Os04g17330OsAffx.3812.1.S1_x_at11/114+9471977..9472383hypothetical protein
LOC_Os04g17340OsAffx.27937.1.S1_at2/114+9476575..9479909retrotransposon protein, putative, unclassified
LOC_Os04g17340OsAffx.22699.1.S1_x_at1/114+9476575..9479909retrotransposon protein, putative, unclassified
LOC_Os04g17350NANA4+9480288..9482383retrotransposon protein, putative, unclassified
LOC_Os04g17360OsAffx.3813.1.S1_at10/114+9483655..9484729hypothetical protein
LOC_Os04g17370NANA4+9486757..9489945hypothetical protein
LOC_Os04g17380NANA4+9490353..9490871retrotransposon protein, putative, unclassified
LOC_Os04g17390OsAffx.22699.1.S1_x_at2/114+9491745..9494116retrotransposon protein, putative, unclassified
LOC_Os04g17400NANA4+9494227..9496145retrotransposon protein, putative, unclassified
LOC_Os04g17410NANA4+9500604..9505169retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17420NANA4+9505422..9506309retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3813.1.S1_at--427--4333Chr08:6469681..6469843 (25 bp)
CCATCGGCTGCAGCCGATATGTTCT
LOC_Os08g10980
OsAffx.3813.1.S1_at--305--5571Chr04:9484051..9484075 (25 bp)
GAAAGAAACCATGCTAGATGTCTCA
LOC_Os04g17360
OsAffx.3813.1.S1_at--306--631Chr04:9484041..9484065 (25 bp)
ATGCTAGATGTCTCAAAGCGGCTTG
LOC_Os04g17360
OsAffx.3813.1.S1_at--572--10751Chr04:9483920..9484043 (25 bp)
TTGAAGGCTCTCTAGTGCATCGGCT
LOC_Os04g17360
OsAffx.3813.1.S1_at--544--911Chr04:9483916..9484039 (25 bp)
AGGCTCTCTAGTGCATCGGCTCAAG
LOC_Os04g17360
OsAffx.3813.1.S1_at--701--3531Chr04:9483832..9483856 (25 bp)
CATCCAAGCTAGTAGGACTTCGATC
LOC_Os04g17360
OsAffx.3813.1.S1_at--38--2711Chr04:9483827..9483851 (25 bp)
AAGCTAGTAGGACTTCGATCAATGA
LOC_Os04g17360
OsAffx.3813.1.S1_at--27--3611Chr04:9483748..9483772 (25 bp)
CATTGATCGGCTGAACACCAGGAAG
LOC_Os04g17360
OsAffx.3813.1.S1_at--1054--6391Chr04:9483744..9483768 (25 bp)
GATCGGCTGAACACCAGGAAGATAG
LOC_Os04g17360
OsAffx.3813.1.S1_at--123--5491Chr04:9483720..9483744 (25 bp)
GAACTTCTAGAAGAGCTGGAGCAAT
LOC_Os04g17360
OsAffx.3813.1.S1_at--783--5891Chr04:9483708..9483732 (25 bp)
GAGCTGGAGCAATGCAACACACAAA
LOC_Os04g17360
Target Sequence 
CCATCGGCTGCAGCCGATATGTTCTCCTTTGACATCAGGCAATTTATGGATGAGGAAGAAGAAACCACAAGCAAGGCCTT
GGTGCCCCTAGCCAATGATGTGAAAGAAACCATGCTAGATGTCTCAAAGCGGCTTGAAGGCTCTCTAGTGCATCGGCTCA
AGCTTGAAAAAGCAAAGCAAAGGATTGCCGATCATCGTGAAAGAAGAGATCTCGAGGCAACCATCCAAGCTAGTAGGACT
TCGATCAATGAAGAGAAAGCCAAACTTGATGAATTGGAAGCTGGTCCATGTTCTACTCAAGCCAACATTGATCGGCTGAA
CACCAGGAAGATAGAACTTCTAGAAGAGCTGGAGCAATGCAACACACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis