Browse Element(s) Details


OsAffx.5784.1.S1_at

Description tigr:9636.m01066
TID=OsAffx.5784.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1098011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10940OsAffx.20650.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.32036.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.3521.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10940OsAffx.30387.1.S1_at1/118+6443275..6448794retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10950OsAffx.1436.1.S1_x_at1/118+6451147..6452565hypothetical protein
LOC_Os08g10960NANA8+6456655..6457917Zinc knuckle family protein
LOC_Os08g10970OsAffx.16945.1.S1_at10/118+6460601..6462049hypothetical protein
LOC_Os08g10980OsAffx.5784.1.S1_at11/118+6469261..6470496hypothetical protein
LOC_Os08g10980OsAffx.3813.1.S1_at1/118+6469261..6470496hypothetical protein
LOC_Os08g10990NANA8+6471113..6474013retrotransposon protein, putative, unclassified
LOC_Os08g11000Os.53142.1.S1_at2/118+6474510..6476468retrotransposon protein, putative, unclassified
LOC_Os08g11000OsAffx.199.1.S1_at1/118+6474510..6476468retrotransposon protein, putative, unclassified
LOC_Os08g11010Os.53142.1.S1_at2/118+6481581..6484393retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11020NANA8+6485562..6487053retrotransposon protein, putative, unclassified
LOC_Os08g11030NANA8+6488679..6489621hypothetical protein
LOC_Os08g11040NANA8+6490304..6493759hypothetical protein
LOC_Os08g11050OsAffx.16946.1.S1_at10/118+6494374..6498560retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11050OsAffx.30350.1.S1_at1/118+6494374..6498560retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5784.1.S1_at--83--5531Chr08:6469512..6469536 (25 bp)
GAAAAAGCCAGCACCAGTACCATCT
LOC_Os08g10980
OsAffx.5784.1.S1_at--507--1591Chr08:6469539..6469839 (25 bp)
AGCTCCATCGGTCTTGGCCGATATG
LOC_Os08g10980
OsAffx.5784.1.S1_at--814--6711Chr08:6469839..6469863 (25 bp)
GTTCTCCTTTGATATTCGGCAATAC
LOC_Os08g10980
OsAffx.5784.1.S1_at--334--9571Chr08:6469899..6469923 (25 bp)
TCTTGCCCCTCTAACTGATGATGTG
LOC_Os08g10980
OsAffx.5784.1.S1_at--741--371Chr08:6469944..6469968 (25 bp)
ATCAACTCGGTTGGAGGCCTCTCTA
LOC_Os08g10980
OsAffx.5784.1.S1_at--1048--4451Chr08:6469960..6469984 (25 bp)
GCCTCTCTAGATGTATTGGTCGCCT
LOC_Os08g10980
OsAffx.5784.1.S1_at--1053--8591Chr08:6469976..6470000 (25 bp)
TGGTCGCCTACTGTGGATCAATAAG
LOC_Os08g10980
OsAffx.5784.1.S1_at--347--10091Chr08:6470257..6470280 (24 bp)
TAGGATTGAGGTCTTGGCTCAGCTT
LOC_Os08g10980
OsAffx.5784.1.S1_at--759--6091Chr08:6470284..6470308 (25 bp)
GAGTGCAACACCGAGTTAGCCTTAA
LOC_Os08g10980
OsAffx.5784.1.S1_at--155--2331Chr08:6470316..6470340 (25 bp)
AAAGTTAGCCGATCTGCCCAAGGTT
LOC_Os08g10980
OsAffx.5784.1.S1_at--868--9171Chr08:6470385..6470409 (25 bp)
TGCCGATCTAACCAAGTCCTTGAAG
LOC_Os08g10980
Target Sequence 
GAAAAAGCCAGCACCAGTACCATCTCCAGCTCCATCGGTCTTGGCCGATATGTTCTCCTTTGATATTCGGCAATACTTCG
ATGAAGAAGAGGAAGACACCACTAGCAAGGCTCTTGCCCCTCTAACTGATGATGTGAAAAGGAATCTCCAAGATATATCA
ACTCGGTTGGAGGCCTCTCTAGATGTATTGGTCGCCTACTGTGGATCAATAAGAACTAGGATTGAGGTCTTGGCTCAGCT
TGAAGAGTGCAACACCGAGTTAGCCTTAAAGAGGCAAAAGTTAGCCGATCTGCCCAAGGTTGTTGAAGAACAGAAGTTGA
AGTTGAAGGCTACCATCAGAAATGTTGCCGATCTAACCAAGTCCTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis