Browse Element(s) Details


Os.52305.1.S1_at

Description gb:AK066265.1
DB_XREF= gi:32976283
TID=Os.52305.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059M15, full insert sequence.
FL= gb:AK066265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1074011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g145201/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10680NANA8+6287738..6288025hypothetical protein
LOC_Os08g10690NANA8+6291160..6291399hypothetical protein
LOC_Os08g10700NANA8+6292639..6292896hypothetical protein
LOC_Os08g10710OsAffx.30226.4.S1_at4/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.4.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.2.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.24587.1.S1_x_at3/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.1.S1_x_at2/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.442.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.19052.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.442.1.S1_x_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.1.S1_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10710OsAffx.30226.2.S1_s_at1/118+6300930..6304898retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10730Os.51445.1.S1_at11/118+6307531..6309280expressed protein
LOC_Os08g10740Os.52305.2.S1_x_at11/118+6312819..6318031transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g10740Os.52305.1.S1_at11/118+6312819..6318031transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g10760OsAffx.14773.1.S1_at11/118+6318967..6320497hypothetical protein
LOC_Os08g10770NANA8+6322550..6327493retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10780Os.52707.1.S1_at10/118+6327947..6333275BED zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52305.1.S1_at--649--7991Chr08:6317448..6317472 (25 bp)
GGATGATGCTTTCATTCTTGCCACA
LOC_Os08g10740
Os.52305.1.S1_at--31--8212Chr08:6317475..6317499 (25 bp)
GGCAACAAAGGTTTTCTACTTGGAT
LOC_Os08g10740
Os.52305.1.S1_at--1113--2191Chr08:6317504..6317528 (25 bp)
ACAAGCATGGTGAACCCTGGAAAGT
LOC_Os08g10740
Os.52305.1.S1_at--682--2251Chr08:6317536..6317560 (25 bp)
AAATTTTCGCATCGGCACTTGTGGA
LOC_Os08g10740
Os.52305.1.S1_at--436--5311Chr08:6317656..6317680 (25 bp)
GAAGGATCTCTGGTCGACAAACAAC
LOC_Os08g10740
Os.52305.1.S1_at--1140--6871Chr08:6317696..6317720 (25 bp)
GTATAAGTGTACCAAAGTCCCTAGT
LOC_Os08g10740
Os.52305.1.S1_at--142--2851Chr08:6317710..6317734 (25 bp)
AAGTCCCTAGTTGATCAGATTCGCA
LOC_Os08g10740
Os.52305.1.S1_at--57--6571Chr08:6317727..6317751 (25 bp)
GATTCGCAGGCAACGGGATCTGGAA
LOC_Os08g10740
Os.52305.1.S1_at--364--691Chr08:6317780..6317804 (25 bp)
ATGACGATGATGATACCTTAGGGCA
LOC_Os08g10740
Os.52305.1.S1_at--972--2471Chr08:6317918..6317942 (25 bp)
AACAGCTCCTAATGTGTTAGCCGTG
LOC_Os08g10740
Os.52305.1.S1_at--371--6511Chr08:6317989..6318013 (25 bp)
GATATGCGAATTCCAGCTGTTCTTG
LOC_Os08g10740
Target Sequence 
GGATGATGCTTTCATTCTTGCCACACAGGCAACAAAGGTTTTCTACTTGGATGATAACAAGCATGGTGAACCCTGGAAAG
TTGTTCAAAAATTTTCGCATCGGCACTTGTGGAATGTGAATGAGGAGGAAAATGATGACAGGCAAGAGGGAGGGGTTGAT
CTGACATACCAAGATGATGAGCAGGAAATATCTCGAGTTGAAACCATGGAAGGATCTCTGGTCGACAAACAACCAGTCAA
CGAAGATGGTATAAGTGTACCAAAGTCCCTAGTTGATCAGATTCGCAGGCAACGGGATCTGGAAGTTGAAGAAGATGACC
TGTACAATGATGATGACGATGATGATACCTTAGGGCAGTATGATAGTGAAAATGAATGTACAATTATGATCCCTAATGAT
GATGGTGAGTATAGTGATGTCGAGTAATTGAGATATGTGAATCTGAGTTGTGATGAAATTGTTGTTTTTAAACAGCTCCT
AATGTGTTAGCCGTGAAATAATTATGAATTGTGAACTCAATTGTGTAAACTCCTTAATTGAGATATGCGAATTCCAGCTG
TTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis