Browse Element(s) Details


OsAffx.5780.1.A1_at

Description tigr:9636.m01037
TID=OsAffx.5780.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g051903/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05130Os.46725.1.S1_at9/1110+2491190..2492532expressed protein
LOC_Os10g05140NANA10+2493665..2494056hypothetical protein
LOC_Os10g05150OsAffx.30289.1.S1_at11/1110+2495127..2495342hypothetical protein
LOC_Os10g05160OsAffx.20753.1.S1_at11/1110+2502113..2504631Protein kinase domain containing protein
LOC_Os10g05170OsAffx.30290.1.S1_at11/1110+2508119..2508601serine threonine kinase, putative
LOC_Os10g05180Os.46724.1.S1_at9/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05180OsAffx.18166.1.S1_at2/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05190Os.47463.1.S1_x_at6/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.52305.2.S1_x_at5/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.14491.2.S1_x_at4/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190OsAffx.5780.1.A1_at3/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05200Os.46847.1.S1_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05200Os.46847.2.S1_x_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05210Os.11061.1.S1_at11/1110+2538161..2541395F-box domain containing protein, expressed
LOC_Os10g05210Os.46074.1.A1_at6/1110+2538161..2541395F-box domain containing protein, expressed
LOC_Os10g05220Os.31936.1.S1_at11/1110+2542990..2548420tRNA-guanine transglycosylases, various specificities family protein, expressed
LOC_Os10g05230Os.10464.1.S1_at11/1110+2551663..2556201Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5780.1.A1_at--1096--10212Chr10:2527065..2527089 (25 bp)
TATTGCTGGGAGACATAAGAATCCC
LOC_Os10g05190
OsAffx.5780.1.A1_at--389--5992Chr10:2527074..2527098 (25 bp)
GAGACATAAGAATCCCAACGCACAT
LOC_Os10g05190
OsAffx.5780.1.A1_at--25--1412Chr10:2527075..2527099 (25 bp)
AGACATAAGAATCCCAACGCACATC
LOC_Os10g05190
OsAffx.5780.1.A1_at--557--351Chr08:6312762..6312786 (25 bp)
ATAAGAATCCCAACGCACATCTAGC
NONE
OsAffx.5780.1.A1_at--537--9791Chr08:6312763..6312787 (25 bp)
TAAGAATCCCAACGCACATCTAGCA
NONE
OsAffx.5780.1.A1_at--644--1471Chr08:6312765..6312789 (25 bp)
AGAATCCCAACGCACATCTAGCAAA
NONE
OsAffx.5780.1.A1_at--937--5251Chr08:6312766..6312790 (25 bp)
GAATCCCAACGCACATCTAGCAAAG
NONE
OsAffx.5780.1.A1_at--879--531Chr08:6312768..6312792 (25 bp)
ATCCCAACGCACATCTAGCAAAGAC
NONE
OsAffx.5780.1.A1_at--1125--2591Chr08:6312773..6312797 (25 bp)
AACGCACATCTAGCAAAGACCAACG
NONE
OsAffx.5780.1.A1_at--334--5111Chr08:6312776..6312800 (25 bp)
GCACATCTAGCAAAGACCAACGCCG
NONE
OsAffx.5780.1.A1_at--200--451Chr08:6312780..6312804 (25 bp)
ATCTAGCAAAGACCAACGCCGCTGC
NONE
Target Sequence 
TATTGCTGGGAGACATAAGAATCCCAACGCACATCTAGCAAAGACCAACGCCGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5780.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis