Browse Element(s) Details


OsAffx.30289.1.S1_at

Description tigr:9638.m00426
TID=OsAffx.30289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0515011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05069Os.46726.1.S1_x_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.6803.1.S1_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.57362.1.S1_at2/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.384.1.S1_at1/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05088Os.46452.1.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_x_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.2.S1_x_at10/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05110NANA10+2481497..2481769hypothetical protein
LOC_Os10g05120NANA10+2484961..2485675hypothetical protein
LOC_Os10g05130Os.46725.1.S1_at9/1110+2491190..2492532expressed protein
LOC_Os10g05140NANA10+2493665..2494056hypothetical protein
LOC_Os10g05150OsAffx.30289.1.S1_at11/1110+2495127..2495342hypothetical protein
LOC_Os10g05160OsAffx.20753.1.S1_at11/1110+2502113..2504631Protein kinase domain containing protein
LOC_Os10g05170OsAffx.30290.1.S1_at11/1110+2508119..2508601serine threonine kinase, putative
LOC_Os10g05180Os.46724.1.S1_at9/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05180OsAffx.18166.1.S1_at2/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05190Os.47463.1.S1_x_at6/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.52305.2.S1_x_at5/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.14491.2.S1_x_at4/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190OsAffx.5780.1.A1_at3/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30289.1.S1_at--300--8411Chr10:2495212..2495236 (25 bp)
GGCCTCATCCGCACGGCCTCGGAGG
LOC_Os10g05150
OsAffx.30289.1.S1_at--902--6211Chr10:2495233..2495257 (25 bp)
GAGGCCGAGGTCTCCAATCACTAGG
LOC_Os10g05150
OsAffx.30289.1.S1_at--489--891Chr10:2495234..2495258 (25 bp)
AGGCCGAGGTCTCCAATCACTAGGC
LOC_Os10g05150
OsAffx.30289.1.S1_at--282--4511Chr10:2495236..2495260 (25 bp)
GCCGAGGTCTCCAATCACTAGGCTA
LOC_Os10g05150
OsAffx.30289.1.S1_at--1142--4051Chr10:2495238..2495262 (25 bp)
CGAGGTCTCCAATCACTAGGCTACA
LOC_Os10g05150
OsAffx.30289.1.S1_at--429--6151Chr10:2495239..2495263 (25 bp)
GAGGTCTCCAATCACTAGGCTACAT
LOC_Os10g05150
OsAffx.30289.1.S1_at--1033--1011Chr10:2495240..2495264 (25 bp)
AGGTCTCCAATCACTAGGCTACATA
LOC_Os10g05150
OsAffx.30289.1.S1_at--669--7812Chr10:2495241..2495265 (25 bp)
GGTCTCCAATCACTAGGCTACATAC
LOC_Os10g05150
OsAffx.30289.1.S1_at--539--7171Chr10:2495242..2495266 (25 bp)
GTCTCCAATCACTAGGCTACATACC
LOC_Os10g05150
OsAffx.30289.1.S1_at--312--4851Chr10:2495257..2495281 (25 bp)
GCTACATACCCCGTGTCAGACAGGG
LOC_Os10g05150
OsAffx.30289.1.S1_at--497--2431Chr10:2495284..2495308 (25 bp)
AACAAGGCCCCGCTGTGCCCCGTGC
LOC_Os10g05150
Target Sequence 
GGCCTCATCCGCACGGCCTCGGAGGCCGAGGTCTCCAATCACTAGGCTACATACCCCGTGTCAGACAGGGGGAACAAGGC
CCCGCTGTGCCCCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis