Browse Element(s) Details


Os.6803.1.S1_at

Description gb:AK069822.1
DB_XREF= gi:32979846
TID=Os.6803.1
CNT=71
FEA=FLmRNA
TIER=FL+Stack
STK=34
UG=Os.6803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alpha-mannosidase (OSJNBa0029P06.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027F12, full insert sequence.
FL= gb:AK069822.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0506911/11glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os03g133701/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05020Os.9427.1.S1_at11/1110+2438099..2439870Cytochrome P450 family protein, expressed
LOC_Os10g05030OsAffx.30286.1.S1_at11/1110+2442198..2442741hypothetical protein
LOC_Os10g05040Os.47463.1.S1_x_at6/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040Os.14491.2.S1_x_at4/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040OsAffx.16187.1.S1_at1/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05050OsAffx.12510.1.S1_at11/1110+2455727..2456601hypothetical protein
LOC_Os10g05069Os.46726.1.S1_x_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.6803.1.S1_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.57362.1.S1_at2/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.384.1.S1_at1/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05088Os.46452.1.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_x_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.2.S1_x_at10/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05110NANA10+2481497..2481769hypothetical protein
LOC_Os10g05120NANA10+2484961..2485675hypothetical protein
LOC_Os10g05130Os.46725.1.S1_at9/1110+2491190..2492532expressed protein
LOC_Os10g05140NANA10+2493665..2494056hypothetical protein
LOC_Os10g05150OsAffx.30289.1.S1_at11/1110+2495127..2495342hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007049biological_processcell cycle
GO:0004559molecular_functionalpha-mannosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6803.1.S1_at--600--10271Chr10:2472778..2473036 (25 bp)
TTTGCACATGAGGACGAACGCAGTT
LOC_Os10g05069
Os.6803.1.S1_at--809--3851Chr10:2473717..2473741 (25 bp)
CTGAACTGCGGTTGTTTTGGCCTTT
LOC_Os10g05069
Os.6803.1.S1_at--29--10812Chr10:2473728..2473752 (25 bp)
TTGTTTTGGCCTTTTATTCTTCTCT
LOC_Os10g05069
Os.6803.1.S1_at--806--10871Chr10:2473733..2473757 (25 bp)
TTGGCCTTTTATTCTTCTCTCTTTT
LOC_Os10g05069
Os.6803.1.S1_at--789--10351Chr10:2473740..2473764 (25 bp)
TTTATTCTTCTCTCTTTTGCTGTGA
LOC_Os10g05069
Os.6803.1.S1_at--464--9571Chr10:2473745..2473769 (25 bp)
TCTTCTCTCTTTTGCTGTGAGGGAA
LOC_Os10g05069
Os.6803.1.S1_at--992--10251Chr10:2473755..2473779 (25 bp)
TTTGCTGTGAGGGAAAGGCTTAATT
LOC_Os10g05069
Os.6803.1.S1_at--918--4891Chr10:2473772..2473796 (25 bp)
GCTTAATTTGGATAGTTGCCTGGAT
LOC_Os10g05069
Os.6803.1.S1_at--387--6691Chr10:2473786..2473810 (25 bp)
GTTGCCTGGATTTATCTGAGGATGA
LOC_Os10g05069
Os.6803.1.S1_at--57--731Chr10:2473810..2473834 (25 bp)
ATGTTGCTGTCGGTAACTGGTAATA
LOC_Os10g05069
Os.6803.1.S1_at--354--1351Chr10:2473835..2473859 (25 bp)
AGAGAATAATAAGTGCTTCCAGCAA
LOC_Os10g05069
Target Sequence 
TTTGCACATGAGGACGAACGCAGTTGGAAATCCAACAATATTGCAAAAGCAAGTACGGTAGAAGGAAACTATAGTCTTCC
TGATAATGTTGCAATCATCACCTTGCAGAGTCTTGATGATGGCACCACACTCCTTCGATTGGCGCATCTTTTTCAGGCTC
AAGAGGACACACAATATTCAGTAATGGCAAAGGTTGAATTGAGAAAGCTGTTTGGAAAGAGGATAATCAAAGATTTGACT
GAGACTAGCCTATCTGCAAACCAAAAGAAGTCAGAGATGAAGAAGCTCAATTGGAGAGTAACCGGGGAGAGCAAAACTGA
TCCTGCACCATTGAAGGGTGGCCCAGTTGACAGCCACGCCCTTGTTGTTGAGCTTGGACCGATGGAGATACGCACATTCT
TGCTGAAATTCTGAACTGCGGTTGTTTTGGCCTTTTATTCTTCTCTCTTTTGCTGTGAGGGAAAGGCTTAATTTGGATAG
TTGCCTGGATTTATCTGAGGATGATGTTGCTGTCGGTAACTGGTAATAAGAGAATAATAAGTGCTTCCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis