Browse Element(s) Details


OsAffx.12510.1.S1_at

Description tigr:9638.m00416
TID=OsAffx.12510.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AC112513 Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0505011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05010Os.52741.1.S1_at11/1110+2429826..2432129expressed protein
LOC_Os10g05020Os.9427.1.S1_at11/1110+2438099..2439870Cytochrome P450 family protein, expressed
LOC_Os10g05030OsAffx.30286.1.S1_at11/1110+2442198..2442741hypothetical protein
LOC_Os10g05040Os.47463.1.S1_x_at6/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040Os.14491.2.S1_x_at4/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040OsAffx.16187.1.S1_at1/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05050OsAffx.12510.1.S1_at11/1110+2455727..2456601hypothetical protein
LOC_Os10g05069Os.46726.1.S1_x_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.6803.1.S1_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.57362.1.S1_at2/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.384.1.S1_at1/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05088Os.46452.1.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_x_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.2.S1_x_at10/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05110NANA10+2481497..2481769hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12510.1.S1_at--307--9671Chr10:2456348..2456372 (25 bp)
TCACTGACATCGTAGAGTACCTCGA
LOC_Os10g05050
OsAffx.12510.1.S1_at--405--9772Chr02:27734125..27734146 (22 bp)
TAGAGTACCTCGAGGACCGTAGCCT
NONE
OsAffx.12510.1.S1_at--115--4211Chr10:2456242..2456266 (25 bp)
CCCGCGGCCTACAAATCGTGAAGGA
LOC_Os10g05050
OsAffx.12510.1.S1_at--627--7011Chr10:2456210..2456234 (25 bp)
GTACATGCAGGACAATAGTCGTGGA
LOC_Os10g05050
OsAffx.12510.1.S1_at--356--3091Chr10:2456197..2456221 (25 bp)
AATAGTCGTGGAAGGAGCGGCCATC
LOC_Os10g05050
OsAffx.12510.1.S1_at--135--9671Chr10:2456150..2456174 (25 bp)
TCAGCGAGGTGGCATCGCAGCTCCT
LOC_Os10g05050
OsAffx.12510.1.S1_at--3--8251Chr10:2456097..2456121 (25 bp)
GGCAGTAGCCGGACAGTAGGTCCCA
LOC_Os10g05050
OsAffx.12510.1.S1_at--597--1911Chr10:2456005..2456109 (25 bp)
ACAGTAGGTCCCAGCGGATCGGATT
LOC_Os10g05050
OsAffx.12510.1.S1_at--43--6411Chr10:2455989..2456013 (25 bp)
GATCGGATTGGGTCTCTGAGCTCGG
LOC_Os10g05050
OsAffx.12510.1.S1_at--467--8491Chr10:2455946..2455970 (25 bp)
TGGAAGGCCGGCGAACTATGTAGTT
LOC_Os10g05050
OsAffx.12510.1.S1_at--102--5751Chr10:2455912..2455936 (25 bp)
GACGGGAGTCCAAGTCCGAGAAGAC
LOC_Os10g05050
Target Sequence 
TCACTGACATCGTAGAGTACCTCGAGGACCGTAGCCTCGCCGCCGCCCTCGCCTTTTCACACCTCACAACTGCCGCCGCC
ACCGCCTACTCCTCTCCCGCCTCGTCCCCGCGGCCTACAAATCGTGAAGGAGGAGGATGTACATGCAGGACAATAGTCGT
GGAAGGAGCGGCCATCGGTGCGGGGCCAGTTGGCGTCCTCAGCGAGGTGGCATCGCAGCTCCTCCTTCCTCTCCCGACGC
TTTTCCCCCGTGGCAGTAGCCGGACAGTAGGTCCCAGCGGATCGGATTGGGTCTCTGAGCTCGGCGTGCGGCTCGAGAGA
GATGGAAGGCCGGCGAACTATGTAGTTCGGAGAGGAGACGGGAGTCCAAGTCCGAGAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis