Browse Element(s) Details


Os.52741.1.S1_at

Description gb:AK069016.1
DB_XREF= gi:32979040
TID=Os.52741.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52741 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002C03, full insert sequence.
FL= gb:AK069016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0501011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04980Os.46853.2.S1_x_at11/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980Os.46853.1.S1_at9/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980OsAffx.27750.1.S1_x_at2/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980Os.36607.2.S1_x_at1/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04990OsAffx.30285.1.S1_at11/1110+2414285..2416799hypothetical protein
LOC_Os10g05000Os.46564.1.S1_at1/1110+2420647..2423219F-box domain containing protein, expressed
LOC_Os10g05010Os.52741.1.S1_at11/1110+2429826..2432129expressed protein
LOC_Os10g05020Os.9427.1.S1_at11/1110+2438099..2439870Cytochrome P450 family protein, expressed
LOC_Os10g05030OsAffx.30286.1.S1_at11/1110+2442198..2442741hypothetical protein
LOC_Os10g05040Os.47463.1.S1_x_at6/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040Os.14491.2.S1_x_at4/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040OsAffx.16187.1.S1_at1/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05050OsAffx.12510.1.S1_at11/1110+2455727..2456601hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52741.1.S1_at--784--3471Chr10:2430762..2430786 (25 bp)
CAGGCTCCTTTCTTTCGGAACAGGA
LOC_Os10g05010
Os.52741.1.S1_at--997--2471Chr10:2430780..2430804 (25 bp)
AACAGGACCTGAGACATGGGCACCA
LOC_Os10g05010
Os.52741.1.S1_at--578--8911Chr10:2430845..2430869 (25 bp)
TGAGCACGCATGTTGGTTTCTTCAT
LOC_Os10g05010
Os.52741.1.S1_at--188--8011Chr10:2430919..2430943 (25 bp)
GGAGGCCTGTATTATCCTTTCTCTA
LOC_Os10g05010
Os.52741.1.S1_at--1057--2311Chr10:2431739..2431761 (23 bp)
AAAGAAGCCGCAGAACTGTTGCCCC
LOC_Os10g05010
Os.52741.1.S1_at--87--5431Chr10:2431778..2431802 (25 bp)
GAAGCCTAAGGTTCCATTTGCTGGT
LOC_Os10g05010
Os.52741.1.S1_at--25--9131Chr10:2431796..2431820 (25 bp)
TGCTGGTGCGTTGCCTGATATTGAA
LOC_Os10g05010
Os.52741.1.S1_at--1047--6631Chr10:2431849..2431873 (25 bp)
GTTGCTACTAATTCTGGTCCAAGGC
LOC_Os10g05010
Os.52741.1.S1_at--204--9471Chr10:2431979..2432003 (25 bp)
TCAGTAGTAACCTAGCCGCATTAGT
LOC_Os10g05010
Os.52741.1.S1_at--1107--6811Chr10:2432002..2432026 (25 bp)
GTTTATTCCTTATGCAGGTGCTAGC
LOC_Os10g05010
Os.52741.1.S1_at--509--3712Chr10:2432022..2432046 (25 bp)
CTAGCTTTGTGTCCTTTTGTGTTTG
LOC_Os10g05010
Target Sequence 
CAGGCTCCTTTCTTTCGGAACAGGACCTGAGACATGGGCACCAGTGATTCTGTGCTTTGCAGAGGAACATGATGTGGTAT
TTTTGAGCACGCATGTTGGTTTCTTCATGGTCAATATGCAGTCAATGCAATTCAAGAATATTCCCCAAATCCTGAAAGGA
GGCCTGTATTATCCTTTCTCTAGCTTTTATACTAAAGAAGCCGCAGAACTGTTGCCCCCATGTGATATGTCCAAGAAGCC
TAAGGTTCCATTTGCTGGTGCGTTGCCTGATATTGAAGAATATGGTTCAAATATTGGAGAGATTAGTTGCTACTAATTCT
GGTCCAAGGCATAAGAAGAAGATAAATCCAAAACAAACCTTTTATGTGGGCTCTTTACAAGTGGAGATCGATCCAAACTA
ATGGTTCGGTCATGCTTAATTGAATTAAGTACCTATCAGTAGTAACCTAGCCGCATTAGTTTATTCCTTATGCAGGTGCT
AGCTTTGTGTCCTTTTGTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis