Browse Element(s) Details


Os.36607.2.S1_x_at

Description gb:NM_194190.1
DB_XREF= gi:34915417
GEN=P0022B05.21
TID=Os.36607.2
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome1, At1g09310 (P0022B05.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome1, At1g09310 (P0022B05.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g348704/11hypothetical protein
LOC_Os06g213503/11hypothetical protein
LOC_Os11g113301/11expressed protein
LOC_Os10g049801/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34854Os.27439.1.S1_at11/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed
LOC_Os05g34854Os.27439.2.S1_at10/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed
LOC_Os05g34854Os.26961.1.A1_at9/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed
LOC_Os05g34870OsAffx.27750.1.S1_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870OsAffx.27750.1.S1_x_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_x_at4/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_at3/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.46853.2.S1_x_at1/115+20626635..20630073hypothetical protein
LOC_Os05g34880Os.49843.1.S1_at10/115+20638308..20642853Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g34890OsAffx.27168.1.S1_at11/115+20643325..20644127hypothetical protein
LOC_Os05g34900Os.27470.1.S1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.3.A1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.2.S1_a_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34910Os.54914.1.S1_at1/115+20653165..20653807hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36607.2.S1_x_at--316--3371Chr07:1078781..1078805 (25 bp)
CACCGGAGTTCTAGTATCACGATGT
NONE
Os.36607.2.S1_x_at--356--1231Chr07:1078775..1078799 (25 bp)
AGTTCTAGTATCACGATGTCGCGCC
NONE
Os.36607.2.S1_x_at--169--10711Chr07:1078673..1078692 (20 bp)
TTGCTCAATTACTGATCGGTCGCGA
NONE
Os.36607.2.S1_x_at--742--7232Chr05:20629481..20629926 (25 bp)
GTCGCGAGCTGAGATGCTGCTACAA
LOC_Os05g34870
Os.36607.2.S1_x_at--992--611Chr07:1078598..1078622 (25 bp)
ATGCTGCTACAAGGCCAACGTGGAC
NONE
Os.36607.2.S1_x_at--832--8533Chr11:6283061..6283085 (25 bp)
TGGACGGCTTCAGCGCGACGGACTT
LOC_Os11g11330
Os.36607.2.S1_x_at--1131--4591Chr07:1078564..1078588 (25 bp)
GCGACGGACTTCCACCGTCATTGGC
NONE
Os.36607.2.S1_x_at--250--1791Chr07:1078551..1078575 (25 bp)
ACCGTCATTGGCTGCATGGCCACCG
NONE
Os.36607.2.S1_x_at--506--732Chr05:20629594..20629618 (25 bp)
ATGTTCGGCAGGTTCAGCCCACAGG
LOC_Os05g34870
Os.36607.2.S1_x_at--1154--1493Chr05:20629627..20629651 (25 bp)
AGCACGGACGACTACTACGACACGC
LOC_Os05g34870
Os.36607.2.S1_x_at--695--9834Chr05:20629922..20629946 (25 bp)
TACAACTCGGCGACGTTCCGGTGGA
LOC_Os05g34870
Target Sequence 
CACCGGAGTTCTAGTATCACGATGTCGCGCCGCCGTTCCCCATGTCCCTCGTCGCCAACACCCACCTCAGAGGCAAAACC
AAAATCATCTTGTTCTTGATGATGATTTAATTCTTGCTCAATTACTGATCGGTCGCGAGCTGAGATGCTGCTACAAGGCC
AACGTGGACGGCTTCAGCGCGACGGACTTCCACCGTCATTGGCTGCATGGCCACCGCCGCTGCCGCCGGCGGGGTCATGC
CGTCATGTTCGGCAGGTTCAGCCCACAGGGGTACCGAAGCACGGACGACTACTACGACACGCTCGACGCCTTCCTCTTCT
ACTGGCCGGACACGGACACGGATGCCGCAGCGACGGCGGCGGTCGTGCTGCCAAAGGTGGGCGGGAGTGGGGCGGCGCTC
ACCGGCGCCGGCGACCTCCGCAGCACGCGGTCGCGTTTCGGGCTGTCGTACGCGAAGCGCTCCACCGTCTTCATCTACAA
CTCGGCGACGTTCCGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36607.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis