Browse Element(s) Details


Os.27439.1.S1_at

Description gb:CB630285
DB_XREF= gi:29625274
DB_XREF=OSIIEb07C11.f
CLONE=OSIIEb07C11
TID=Os.27439.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27439 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194272.1 (A.thaliana) gibberellin 20-oxidase - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3485411/11Gibberellin 20 oxidase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34820Os.11597.1.S1_at11/115+20579841..20585418expressed protein
LOC_Os05g34830Os.37548.1.S1_at10/115+20594824..20597109NAC23, putative, expressed
LOC_Os05g34840OsAffx.27167.1.S1_at11/115+20600365..20600802hypothetical protein
LOC_Os05g34854Os.27439.1.S1_at11/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed
LOC_Os05g34854Os.27439.2.S1_at10/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed
LOC_Os05g34854Os.26961.1.A1_at9/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed
LOC_Os05g34870OsAffx.27750.1.S1_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870OsAffx.27750.1.S1_x_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_x_at4/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_at3/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.46853.2.S1_x_at1/115+20626635..20630073hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009639biological_processresponse to red or far red light
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0005737cellular_componentcytoplasm
GO:0016707molecular_functiongibberellin 3-beta-dioxygenase activity
GO:0045544molecular_functiongibberellin 20-oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27439.1.S1_at--248--7451Chr05:20607400..20607424 (25 bp)
GTGTCCGGCCATGATGGTGTCTCAT
LOC_Os05g34854
Os.27439.1.S1_at--1000--8871Chr05:20607389..20607413 (25 bp)
TGATGGTGTCTCATCGCGACCTCGA
LOC_Os05g34854
Os.27439.1.S1_at--442--6991Chr05:20607363..20607387 (25 bp)
GTACGTCGTCGTCTAGCTCCATTGG
LOC_Os05g34854
Os.27439.1.S1_at--791--9291Chr05:20607318..20607342 (25 bp)
TCCGCCGTACGGCAAAGGACGAGTA
LOC_Os05g34854
Os.27439.1.S1_at--951--6951Chr05:20607296..20607320 (25 bp)
GTAGCTATAGCTTAGCATCCTGACC
LOC_Os05g34854
Os.27439.1.S1_at--707--3851Chr05:20607277..20607301 (25 bp)
CTGACCACACGTACCAAATGCTGAG
LOC_Os05g34854
Os.27439.1.S1_at--559--9731Chr05:20607129..20607153 (25 bp)
TAATTAATCCGTTGTCCGACCGCCA
LOC_Os05g34854
Os.27439.1.S1_at--818--1391Chr05:20607006..20607030 (25 bp)
AGACGTACACACACATCATTATCAA
LOC_Os05g34854
Os.27439.1.S1_at--700--2491Chr05:20606963..20606987 (25 bp)
AACAGTACCCAACAGCAGACAGATG
LOC_Os05g34854
Os.27439.1.S1_at--346--1311Chr05:20606943..20606967 (25 bp)
AGATGTCCCTACTACTAGCATGCAT
LOC_Os05g34854
Os.27439.1.S1_at--762--10011Chr05:20606928..20606952 (25 bp)
TAGCATGCATGTCACTTACTACAAG
LOC_Os05g34854
Target Sequence 
GTGTCCGGCCATGATGGTGTCTCATCGCGACCTCGACGTACGTCGTCGTCTAGCTCCATTGGCTCCACCCGTTTTGCTCG
CGTCCGCCGTACGGCAAAGGACGAGTAGCTATAGCTTAGCATCCTGACCACACGTACCAAATGCTGAGATCTCACNTCGA
TCTCGCTATAATCCGTTCNGTTAGTAAATTGGCATGTCTTTAATTTGGAAGTTAATCATCATATGGAATATTTGCGGTAA
AAAACCGTCCAAGTATGAAAAGCACCAAGATTAATTAATCCGTTGTCCGACCGCCAAGTAAACACCGCAAAAAATATCAT
GAGATTCTTGTAGTGATGGTTTCGTAGAAAGAAATAAGGCATCTTATATTCATTTTTTGGGGTTTATAAAAGGAAGACGT
ACACACACATCATTATCAAATATNNCANGNACAAACTAACAGTACCCAACAGCAGACAGATGTCCCTACTACTAGCATGC
ATGTCACTTACTACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis