Browse Element(s) Details


Os.37548.1.S1_at

Description gb:AK107746.1
DB_XREF= gi:32992955
TID=Os.37548.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-H04, full insert sequence.
FL= gb:AK107746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3483010/11NAC23, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34820Os.11597.1.S1_at11/115+20579841..20585418expressed protein
LOC_Os05g34830Os.37548.1.S1_at10/115+20594824..20597109NAC23, putative, expressed
LOC_Os05g34840OsAffx.27167.1.S1_at11/115+20600365..20600802hypothetical protein
LOC_Os05g34854Os.27439.1.S1_at11/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed
LOC_Os05g34854Os.27439.2.S1_at10/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed
LOC_Os05g34854Os.26961.1.A1_at9/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009744biological_processresponse to sucrose stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37548.1.S1_at--528--9091Chr05:20596455..20596479 (25 bp)
TGCTCGGAGCACGTGCTGACGACGT
LOC_Os05g34830
Os.37548.1.S1_at--150--671Chr05:20596731..20596755 (25 bp)
ATGAATGATCTGATATTCTATCGGG
LOC_Os05g34830
Os.37548.1.S1_at--1155--4211Chr05:20596770..20596794 (25 bp)
CCGCTGGAATCGATCGGTGGCCGTT
LOC_Os05g34830
Os.37548.1.S1_at--45--4511Chr05:20596803..20596827 (25 bp)
GCCGAGTTATTGGTAGCCGTCAGAT
LOC_Os05g34830
Os.37548.1.S1_at--455--6771Chr05:20596847..20596871 (25 bp)
GTTAGTTACTAGTATCCGTATGGAC
LOC_Os05g34830
Os.37548.1.S1_at--963--10051Chr05:20596856..20596880 (25 bp)
TAGTATCCGTATGGACGGCGGCGAT
LOC_Os05g34830
Os.37548.1.S1_at--945--7631Chr05:20596888..20596912 (25 bp)
GGGAGCCCCGAGATGCGTGTAGGAA
LOC_Os05g34830
Os.37548.1.S1_at--1088--971Chr05:20596912..20596936 (25 bp)
AGGAGATGCATGGTACTGTACTCGA
LOC_Os05g34830
Os.37548.1.S1_at--70--7851Chr05:20596923..20596947 (25 bp)
GGTACTGTACTCGAGAATTATAAGC
LOC_Os05g34830
Os.37548.1.S1_at--776--351Chr05:20596942..20596966 (25 bp)
ATAAGCCGTGTGTATATGCGAAATT
LOC_Os05g34830
Os.37548.1.S1_at--568--3171NONE
AATTGGTTGGCTAGATCGATCAGGG
NONE
Target Sequence 
TGCTCGGAGCACGTGCTGACGACGTCGGCGTCGTCCGGCGGCGTCGTCGAGCGGCCGGAGGTGCAGAGCCAGCCCAAGAT
CGCCGAGTGGGAGCGCACGTTCGCCGGCGCCGCCGCCCCGGCTGGCGCCGTCAGCNCGGCCGGACCGATTNTGGGCCAGC
TNGACCCCGCCGCCGCCGNNNNNNNNNTNGCCGGCGGCGGCGACCCGCTCCTCCAGGACATCCTCATGTACTGGGGCAAG
CCGTTNTGACGGCTCGGCTCGGCTCGGCGGCTTGAGCCGGGAGGGATGAATGATCTGATATTCTATCGGGGTGGCTCGGG
CGAGCCGCTGGAATCGATCGGTGGCCGTTGGATGGCGGCCGAGTTATTGGTAGCCGTCAGATGGGAGATGGAATGGCATT
AGTTAGTTACTAGTATCCGTATGGACGGCGGCGATGAAACAGGGGAGCCCCGAGATGCGTGTAGGAAGGAGATGCATGGT
ACTGTACTCGAGAATTATAAGCCGTGTGTATATGCGAAATTGGTTGGCTAGATCGATCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis