Browse Element(s) Details


OsAffx.27167.1.S1_at

Description tigr:9633.m03234
TID=OsAffx.27167.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3484011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34820Os.11597.1.S1_at11/115+20579841..20585418expressed protein
LOC_Os05g34830Os.37548.1.S1_at10/115+20594824..20597109NAC23, putative, expressed
LOC_Os05g34840OsAffx.27167.1.S1_at11/115+20600365..20600802hypothetical protein
LOC_Os05g34854Os.27439.1.S1_at11/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed
LOC_Os05g34854Os.27439.2.S1_at10/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed
LOC_Os05g34854Os.26961.1.A1_at9/115+20602162..20608934Gibberellin 20 oxidase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004351molecular_functionglutamate decarboxylase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27167.1.S1_at--877--4553Chr07:25366971..25367330 (25 bp)
GCGCCACCTTCGGTTTCAATGGGAG
NONE
OsAffx.27167.1.S1_at--678--3351Chr05:20600630..20600654 (25 bp)
CACCTTCGGTTTCAATGGGAGCACA
LOC_Os05g34840
OsAffx.27167.1.S1_at--783--10611Chr05:20600626..20600650 (25 bp)
TTCGGTTTCAATGGGAGCACATCGT
LOC_Os05g34840
OsAffx.27167.1.S1_at--490--7871Chr05:20600623..20600647 (25 bp)
GGTTTCAATGGGAGCACATCGTGCT
LOC_Os05g34840
OsAffx.27167.1.S1_at--934--2971Chr05:20600617..20600641 (25 bp)
AATGGGAGCACATCGTGCTCCTCCT
LOC_Os05g34840
OsAffx.27167.1.S1_at--705--9251Chr05:20600569..20600593 (25 bp)
TCCTCTACACAGCATGGACCTCGCG
LOC_Os05g34840
OsAffx.27167.1.S1_at--58--4471Chr05:20600448..20600472 (25 bp)
GCCTCGCATTGCTGGCCTCAGCAGA
LOC_Os05g34840
OsAffx.27167.1.S1_at--723--71Chr05:20600441..20600465 (25 bp)
ATTGCTGGCCTCAGCAGACTCACTC
LOC_Os05g34840
OsAffx.27167.1.S1_at--11--9671Chr05:20600431..20600455 (25 bp)
TCAGCAGACTCACTCTCGCAGAGAA
LOC_Os05g34840
OsAffx.27167.1.S1_at--403--5051Chr05:20600428..20600452 (25 bp)
GCAGACTCACTCTCGCAGAGAACAG
LOC_Os05g34840
OsAffx.27167.1.S1_at--437--5711Chr05:20600425..20600449 (25 bp)
GACTCACTCTCGCAGAGAACAGAGA
LOC_Os05g34840
Target Sequence 
GCGCCACCTTCGGTTTCAATGGGAGCACATCGTGCTCCTCCTCGCCGACGCGCTCCGCATGGACCTCCTCTACACAGCAT
GGACCTCGCGCTCCGCGTGGACCTCCTCTCCGCGGGTGGCCGCCATGCTTCCCCATCACCGCCGCCGCTGGCGGGCGCCA
TCGAGGCGCCGCCCTCCTCCTCTCCCGCCTCGCATTGCTGGCCTCAGCAGACTCACTCTCGCAGAGAACAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis