Browse Element(s) Details


OsAffx.27168.1.S1_at

Description tigr:9633.m03239
TID=OsAffx.27168.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3489011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34870OsAffx.27750.1.S1_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870OsAffx.27750.1.S1_x_at11/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_x_at4/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.36607.2.S1_at3/115+20626635..20630073hypothetical protein
LOC_Os05g34870Os.46853.2.S1_x_at1/115+20626635..20630073hypothetical protein
LOC_Os05g34880Os.49843.1.S1_at10/115+20638308..20642853Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g34890OsAffx.27168.1.S1_at11/115+20643325..20644127hypothetical protein
LOC_Os05g34900Os.27470.1.S1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.3.A1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.2.S1_a_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34910Os.54914.1.S1_at1/115+20653165..20653807hypothetical protein
LOC_Os05g34920Os.26692.1.S1_at11/115+20665685..20669702expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27168.1.S1_at--944--8071Chr05:20643426..20643450 (25 bp)
GGAGCTTCCACCGATGACCGAAGAA
LOC_Os05g34890
OsAffx.27168.1.S1_at--1073--5811Chr05:20643441..20643465 (25 bp)
GACCGAAGAACTCTGTCACTTGCAC
LOC_Os05g34890
OsAffx.27168.1.S1_at--250--8711Chr05:20643500..20643524 (25 bp)
TGTCCGGGACGAGCTTCTGGAGCAC
LOC_Os05g34890
OsAffx.27168.1.S1_at--397--9591Chr05:20643547..20643571 (25 bp)
TCATCAACGAGCCTCCTGAAGTCGA
LOC_Os05g34890
OsAffx.27168.1.S1_at--948--4851Chr05:20643701..20643725 (25 bp)
GCTAGGAATGGCATCACCAGCGAGA
LOC_Os05g34890
OsAffx.27168.1.S1_at--421--4811Chr05:20643797..20643821 (25 bp)
GCTCGGACGGGCTCAACAATTGCCT
LOC_Os05g34890
OsAffx.27168.1.S1_at--1115--5331Chr05:20643932..20643956 (25 bp)
GAAGTATGGCCACGAACGCTTCGGC
LOC_Os05g34890
OsAffx.27168.1.S1_at--623--3111Chr05:20643976..20644000 (25 bp)
AATTTCCCCGAAAGCTGATGCTCCA
LOC_Os05g34890
OsAffx.27168.1.S1_at--1077--8851Chr05:20643991..20644015 (25 bp)
TGATGCTCCATTGCAAGTCGCCAGT
LOC_Os05g34890
OsAffx.27168.1.S1_at--581--9531Chr05:20644027..20644051 (25 bp)
TCTACACCGAGGGAGCGCCAGAGGC
LOC_Os05g34890
OsAffx.27168.1.S1_at--526--9191Chr05:20644054..20644078 (25 bp)
TGCCAACGCCGGCTTGGGAAGAAAA
LOC_Os05g34890
Target Sequence 
GGAGCTTCCACCGATGACCGAAGAACTCTGTCACTTGCACCGCCATGACGGGCGTGGGGAGCTATCACAGCGGATGTCCG
GGACGAGCTTCTGGAGCACGTCCTCATCGTGGTCCTCCCCTTCATCAACGAGCCTCCTGAAGTCGAGGTGGTCGACGATG
CTAGGAATGGCATCACCAGCGAGAGAAGGGGAATTGGCAAAGGAGGAGATGGTTTCTTGGTCGCCGTCTACCTCCGGCGC
ACGCAGGCTGGGTGAGCTCGGACGGGCTCAACAATTGCCTCCCCCTCCCTCCCGAACTTGCTGGCCTCCTCTCCCTCCCT
CTCATGCCTTCGCCTCCCCCACAGGCTGCCTCTTTGCCGCGTTGTGGTTGGGTTGGGAATGGCCCCAGAAGAAGTATGGC
CACGAACGCTTCGGCGATGGCTGTCCTCCTCCCCAATTTCCCCGAAAGCTGATGCTCCATTGCAAGTCGCCAGTGGCCGC
GGCGCTCTACACCGAGGGAGCGCCAGAGGCTGTGCCAACGCCGGCTTGGGAAGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis