Browse Element(s) Details


Os.54914.1.S1_at

Description gb:AK107091.1
DB_XREF= gi:32992300
TID=Os.54914.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H01, full insert sequence.
FL= gb:AK107091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5083011/11Protein kinase domain containing protein, expressed
LOC_Os05g349101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50780OsAffx.15186.1.S1_at11/115+29046079..29048554Leucine Rich Repeat family protein
LOC_Os05g50790OsAffx.27396.1.S1_at11/115+29048775..29051796hypothetical protein
LOC_Os05g50800Os.15417.1.S1_at9/115+29054191..29056893expressed protein
LOC_Os05g50810Os.12678.1.S1_at11/115+29057230..29061250Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g50820Os.8034.1.S1_at11/115+29066820..29068992expressed protein
LOC_Os05g50830Os.54914.1.S1_at11/115+29071353..29073616Protein kinase domain containing protein, expressed
LOC_Os05g50830OsAffx.27515.1.S1_x_at1/115+29071353..29073616Protein kinase domain containing protein, expressed
LOC_Os05g50840Os.12128.1.S1_at11/115+29073640..29078396Mitochondrial carrier protein, expressed
LOC_Os05g50850NANA5+29080826..29081838hypothetical protein
LOC_Os05g50860NANA5+29092050..29093882transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50870NANA5+29094006..29095380transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50880Os.47463.1.S1_x_at6/115+29096769..29101393transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50880Os.14491.2.S1_x_at4/115+29096769..29101393transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54914.1.S1_at--1103--5172Chr12:23355463..23355487 (25 bp)
GCAAGTGTCGCAGCGGCATTGTTAC
NONE
Os.54914.1.S1_at--39--4932Chr12:23355478..23355508 (25 bp)
GCATTGTTACTCGTCTAAAGCCTTC
NONE
Os.54914.1.S1_at--921--2812Chr05:29073311..29073335 (25 bp)
AAGATTACAGCTAGCTCCATGTCCG
LOC_Os05g50830
Os.54914.1.S1_at--712--9231Chr05:29073326..29073350 (25 bp)
TCCATGTCCGTGACGTGTGCAGGGC
LOC_Os05g50830
Os.54914.1.S1_at--287--8451Chr05:29073399..29073423 (25 bp)
TGGCCCGCCGAACGCCGAGGATTAA
LOC_Os05g50830
Os.54914.1.S1_at--358--1011Chr05:29073416..29073440 (25 bp)
AGGATTAAGTCCGACGGCCACCTCA
LOC_Os05g50830
Os.54914.1.S1_at--108--8451Chr05:29073431..29073455 (25 bp)
GGCCACCTCAATAGGGCGGCAATTC
LOC_Os05g50830
Os.54914.1.S1_at--141--3971Chr05:29073481..29073505 (25 bp)
CGGGAACGCTTCAGACTCGGAGTTA
LOC_Os05g50830
Os.54914.1.S1_at--580--5131Chr05:29073511..29073535 (25 bp)
GCAAAATGTTGGGTAGCCTTCTTTC
LOC_Os05g50830
Os.54914.1.S1_at--609--7851Chr05:29073522..29073546 (25 bp)
GGTAGCCTTCTTTCTCATATGATGA
LOC_Os05g50830
Os.54914.1.S1_at--178--6311Chr05:29073542..29073566 (25 bp)
GATGAGAGGTTTTCACTTGTTTCAG
LOC_Os05g50830
Target Sequence 
GCAAGTGTCGCAGCGGCATTGTTACTCGTCTAAAGCCTTCCTCCAAGATTACAGCTAGCTCCATGTCCGTGACGTGTGCA
GGGCCGCCGCAGAAGTCGAGGTCGATGGGCACGGTGAGGCCGCCGCCGGTCGTGGCCCGCCGAACGCCGAGGATTAAGTC
CGACGGCCACCTCAATAGGGCGGCAATTCCGCCTACCCGACGGCGTAAATCCGGCGGGAACGCTTCAGACTCGGAGTTAG
CTTAGCAAAATGTTGGGTAGCCTTCTTTCTCATATGATGAGAGGTTTTCACTTGTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis