Browse Element(s) Details


OsAffx.15186.1.S1_at

Description tigr:9633.m04783
TID=OsAffx.15186.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to L-zip+NBS+LRR
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5078011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50760NANA5+29023326..29023754hypothetical protein
LOC_Os05g50770Os.54485.1.S1_at2/115+29036431..29038295C4-dicarboxylate transporter/malic acid transport family protein, putative
LOC_Os05g50770Os.5608.3.S1_x_at1/115+29036431..29038295C4-dicarboxylate transporter/malic acid transport family protein, putative
LOC_Os05g50780OsAffx.15186.1.S1_at11/115+29046079..29048554Leucine Rich Repeat family protein
LOC_Os05g50790OsAffx.27396.1.S1_at11/115+29048775..29051796hypothetical protein
LOC_Os05g50800Os.15417.1.S1_at9/115+29054191..29056893expressed protein
LOC_Os05g50810Os.12678.1.S1_at11/115+29057230..29061250Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g50820Os.8034.1.S1_at11/115+29066820..29068992expressed protein
LOC_Os05g50830Os.54914.1.S1_at11/115+29071353..29073616Protein kinase domain containing protein, expressed
LOC_Os05g50830OsAffx.27515.1.S1_x_at1/115+29071353..29073616Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15186.1.S1_at--328--10471Chr05:29047486..29047510 (25 bp)
TTACCTCTCCTCAAGACTGCAGAGA
LOC_Os05g50780
OsAffx.15186.1.S1_at--578--10431Chr05:29047378..29047402 (25 bp)
TTATCCCACATGCACAACCTTGAAA
LOC_Os05g50780
OsAffx.15186.1.S1_at--216--5671Chr05:29047330..29047354 (25 bp)
GACATGTTTCCTCGTCTTTGTGAAC
LOC_Os05g50780
OsAffx.15186.1.S1_at--1111--9811Chr05:29047305..29047329 (25 bp)
TAACACTCATTCACTGCCCAAAGTT
LOC_Os05g50780
OsAffx.15186.1.S1_at--228--931Chr05:29047202..29047226 (25 bp)
AGGCAGTTTTAATGGCGTGGCACGA
LOC_Os05g50780
OsAffx.15186.1.S1_at--832--9631Chr05:29047173..29047197 (25 bp)
TCAGGAGCATTTCGCTTTCTCTATG
LOC_Os05g50780
OsAffx.15186.1.S1_at--88--9551Chr05:29047154..29047178 (25 bp)
TCTATGCCAGGAGCTCACAGTATCT
LOC_Os05g50780
OsAffx.15186.1.S1_at--12--491Chr05:29047133..29047157 (25 bp)
ATCTGATGGTTGCAAGGGACTTCTA
LOC_Os05g50780
OsAffx.15186.1.S1_at--947--10711Chr05:29046395..29046419 (25 bp)
TTGCAATACCTATATCAGTCCGAAG
LOC_Os05g50780
OsAffx.15186.1.S1_at--90--3091Chr05:29046359..29046383 (25 bp)
AATAATTGTCGGTTCTTCTCTCTTA
LOC_Os05g50780
OsAffx.15186.1.S1_at--976--7891Chr05:29046349..29046373 (25 bp)
GGTTCTTCTCTCTTATTTCATATGT
LOC_Os05g50780
Target Sequence 
TTACCTCTCCTCAAGACTGCAGAGATAAATGGAATGAGTGCTGTCAGCATCATTGATGATGCATTCTATGGTGATAATGG
CACGTTCCCCTCGCTTGAGAAGCTCATATTATCCCACATGCACAACCTTGAAATCTGGCATCACAGTGAGAGGAAGGACA
TGTTTCCTCGTCTTTGTGAACTAACACTCATTCACTGCCCAAAGTTTGAAGCACTGTGCATGGAGCTGAAGCATCTCCAG
AAGCTAAGCTTGTCGATGAACAACTGGTTGTTGTACAGTAGAAGAGGCAGTTTTAATGGCGTGGCACGAAGCGTCAGGAG
CATTTCGCTTTCTCTATGCCAGGAGCTCACAGTATCTGATGGTTGCAAGGGACTTCTAGAACTGAGGCACATTCAGGAGC
TTGAGGTAAACAAATGGTCATTGCAATACCTATATCAGTCCGAAGAAGGCAAGTTGAATAATTGTCGGTTCTTCTCTCTT
ATTTCATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis