Browse Element(s) Details


OsAffx.27515.1.S1_x_at

Description tigr:9634.m00813
TID=OsAffx.27515.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor-like protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0869011/11Leucine Rich Repeat family protein, expressed
LOC_Os06g087103/11Leucine Rich Repeat family protein, expressed
LOC_Os05g508301/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08650OsAffx.27514.1.S1_at11/116+4312313..4314334pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_s_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08670Os.7552.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08670OsAffx.15315.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08680Os.49907.1.S1_at11/116+4328667..4329598expressed protein
LOC_Os06g08690OsAffx.27515.1.S1_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08690OsAffx.27515.1.S1_x_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08700OsAffx.26548.1.S1_at3/116+4335267..4335824retrotransposon protein, putative, unclassified
LOC_Os06g08710OsAffx.27515.2.S1_at11/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08710OsAffx.27515.1.S1_x_at3/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08720Os.11697.1.S1_at11/116+4346160..4352378Serine carboxypeptidase II-2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27515.1.S1_x_at--900--8271Chr06:4331191..4331215 (25 bp)
GGCATCGCCAAGCTGGTCAAGAACG
LOC_Os06g08690
OsAffx.27515.1.S1_x_at--465--9611Chr06:4331122..4331146 (25 bp)
TCATCTGATCCTTGCAACTCCATCA
LOC_Os06g08690
OsAffx.27515.1.S1_x_at--359--1991Chr06:4331106..4331130 (25 bp)
ACTCCATCACCGGATTGTTACAAGG
LOC_Os06g08690
OsAffx.27515.1.S1_x_at--143--6771Chr06:4331090..4331114 (25 bp)
GTTACAAGGCTCAGTCGGCTACATT
LOC_Os06g08690
OsAffx.27515.1.S1_x_at--131--1151Chr06:4330970..4331102 (25 bp)
AGTCGGCTACATTGCACCAGAATAT
LOC_Os06g08690
OsAffx.27515.1.S1_x_at--496--6131Chr06:4330938..4330962 (25 bp)
GAGGGCATCCATCTACACAGGGTGA
LOC_Os06g08690
OsAffx.27515.1.S1_x_at--391--9872Chr06:4338709..4338733 (25 bp)
TACAGCTTCGGCGTGATGATACTCG
LOC_Os06g08710
OsAffx.27515.1.S1_x_at--178--333Chr05:29072685..29072705 (21 bp)
ATACTCGAGCTGATCACCGGGAAGA
LOC_Os05g50830
OsAffx.27515.1.S1_x_at--266--9032Chr06:4338630..4338654 (25 bp)
TGCACGACTGGGTCAGGCGACACTA
LOC_Os06g08710
OsAffx.27515.1.S1_x_at--852--9711Chr06:4330725..4330749 (25 bp)
TCAACGTCGGGCTCGCGTGCACGCA
LOC_Os06g08690
OsAffx.27515.1.S1_x_at--486--1051Chr06:4330668..4330692 (25 bp)
AGGTGTGCCACGAGATGGCGCTCCT
LOC_Os06g08690
Target Sequence 
GGCATCGCCAAGCTGGTCAAGAACGCCGACGGCGACGTCACCACCAACTCCGGCAGCATCGCCGCCGCCTCATCTGATCC
TTGCAACTCCATCACCGGATTGTTACAAGGCTCAGTCGGCTACATTGCACCAGAATATGGATTAGGAGGGCATCCATCTA
CACAGGGTGACGTGTACAGCTTCGGCGTGATGATACTCGAGCTGATCACCGGGAAGAGGCCAACTGACGTCATCTTCCAC
GAGGGCCTCACGCTGCACGACTGGGTCAGGCGACACTACCCGCACGACGTCGCCGCCGTGGTGGCGCGGTCGTGGCTGAC
GGACGCCGCCGTGGGCTACGACGTCGTGGCGGAGCTGATCAACGTCGGGCTCGCGTGCACGCAGCACTCGCCGCCGGCGC
GGCCGACCATGGTGGAGGTGTGCCACGAGATGGCGCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27515.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis