Browse Element(s) Details


Os.49907.1.S1_at

Description gb:AK119326.1
DB_XREF= gi:37988949
TID=Os.49907.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-B01, full insert sequence.
FL= gb:AK119326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0868011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08650OsAffx.27514.1.S1_at11/116+4312313..4314334pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_s_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08670Os.7552.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08670OsAffx.15315.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08680Os.49907.1.S1_at11/116+4328667..4329598expressed protein
LOC_Os06g08690OsAffx.27515.1.S1_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08690OsAffx.27515.1.S1_x_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08700OsAffx.26548.1.S1_at3/116+4335267..4335824retrotransposon protein, putative, unclassified
LOC_Os06g08710OsAffx.27515.2.S1_at11/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08710OsAffx.27515.1.S1_x_at3/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08720Os.11697.1.S1_at11/116+4346160..4352378Serine carboxypeptidase II-2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49907.1.S1_at--316--4051Chr06:4329017..4329041 (25 bp)
CGATGAGGCCCACCATGGATGACGT
LOC_Os06g08680
Os.49907.1.S1_at--373--1291Chr06:4329050..4329074 (25 bp)
AGATCGCTCGCCTCAAGGACGGTGC
LOC_Os06g08680
Os.49907.1.S1_at--449--6171Chr06:4329094..4329118 (25 bp)
GAGGATGACAACGACCACTGCATAC
LOC_Os06g08680
Os.49907.1.S1_at--771--1971Chr06:4329110..4329134 (25 bp)
ACTGCATACGCTCGGATCCAAGAGA
LOC_Os06g08680
Os.49907.1.S1_at--800--6551Chr06:4329155..4329179 (25 bp)
GATTCTAATTATCCCATGGGCGTCC
LOC_Os06g08680
Os.49907.1.S1_at--638--7571Chr06:4329172..4329196 (25 bp)
GGGCGTCCACTCGTATTTTACATAT
LOC_Os06g08680
Os.49907.1.S1_at--444--1711Chr06:4329254..4329278 (25 bp)
ACCACTCTATAAACACACGGCTACT
LOC_Os06g08680
Os.49907.1.S1_at--324--9831Chr06:4329427..4329451 (25 bp)
TAAACGAGTGGACGCCTACCAGGAA
LOC_Os06g08680
Os.49907.1.S1_at--1034--2331Chr06:4329456..4329480 (25 bp)
AAAGAGTTTCCCTAGTGTGCTTCTG
LOC_Os06g08680
Os.49907.1.S1_at--228--5091Chr06:4329480..4329504 (25 bp)
GCACCATTGCTTCAGTTTGATTCAA
LOC_Os06g08680
Os.49907.1.S1_at--736--7751Chr06:4329545..4329569 (25 bp)
GGTGATATCATGTAGTTTCTTCTCT
LOC_Os06g08680
Target Sequence 
CGATGAGGCCCACCATGGATGACGTGGCGCAGGAGATCGCTCGCCTCAAGGACGGTGCTTGGAGGAAGTGTTGCTGCGAG
GATGACAACGACCACTGCATACGCTCGGATCCAAGAGACAATAGTGTGCTTGGAGAGGGATTCTAATTATCCCATGGGCG
TCCACTCGTATTTTACATATCAACTACACGGTTAAAATAATTTAAAATAAATTATAATATAGATTAATATGTAATATACC
ACTCTATAAACACACGGCTACTGTAAATCGTATTCATGTCAAAATTGTTACTTTCGTTATAACTGGAAGAAGTTAAATTT
AAAATTGCTTGTTTTATGAGGTGATATATTACATATTAATCTTTTTTTTTAATTTTTTAAAAAAACTTTAATCATTTAAG
TGACATTTAATAAACGAGTGGACGCCTACCAGGAAATAAAAAGAGTTTCCCTAGTGTGCTTCTGCACCATTGCTTCAGTT
TGATTCAAGGTTTGTCAAAAGGAAATGCCTAATTTCCACGTAGATATTGGTGATATCATGTAGTTTCTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis