Browse Element(s) Details


Os.7552.1.S1_at

Description gb:AU101367
DB_XREF= gi:9865617
DB_XREF=AU101367
CLONE=E20123
TID=Os.7552.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7552 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180080.1 (A.thaliana) putative glutathione peroxidase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0867011/11Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08640OsAffx.27513.1.S1_s_at11/116+4300561..4302106Transferase family protein, expressed
LOC_Os06g08650OsAffx.27514.1.S1_at11/116+4312313..4314334pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_s_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08670Os.7552.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08670OsAffx.15315.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08680Os.49907.1.S1_at11/116+4328667..4329598expressed protein
LOC_Os06g08690OsAffx.27515.1.S1_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08690OsAffx.27515.1.S1_x_at11/116+4330517..4333807Leucine Rich Repeat family protein, expressed
LOC_Os06g08700OsAffx.26548.1.S1_at3/116+4335267..4335824retrotransposon protein, putative, unclassified
LOC_Os06g08710OsAffx.27515.2.S1_at11/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08710OsAffx.27515.1.S1_x_at3/116+4338308..4341792Leucine Rich Repeat family protein, expressed
LOC_Os06g08720Os.11697.1.S1_at11/116+4346160..4352378Serine carboxypeptidase II-2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004602molecular_functionglutathione peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7552.1.S1_at--278--3931Chr06:4323846..4323870 (25 bp)
CGGCATAAGTACTAGAGGTCACACT
LOC_Os06g08670
Os.7552.1.S1_at--430--6151Chr06:4323860..4323884 (25 bp)
GAGGTCACACTTCAGCTAAGCTCTT
LOC_Os06g08670
Os.7552.1.S1_at--928--9651Chr06:4323871..4323895 (25 bp)
TCAGCTAAGCTCTTCTGTACATATG
LOC_Os06g08670
Os.7552.1.S1_at--521--3871Chr06:4323885..4323909 (25 bp)
CTGTACATATGCCTTGCCTCATAAT
LOC_Os06g08670
Os.7552.1.S1_at--772--591Chr06:4323893..4323917 (25 bp)
ATGCCTTGCCTCATAATTAGAGTTT
LOC_Os06g08670
Os.7552.1.S1_at--303--7431Chr06:4323945..4323969 (25 bp)
GTGTAAAATTACTCACCGGTTATAT
LOC_Os06g08670
Os.7552.1.S1_at--115--271Chr06:4323970..4323994 (25 bp)
ATATGTGCACGTATATAGTTGTAAC
LOC_Os06g08670
Os.7552.1.S1_at--460--3051Chr06:4324015..4324039 (25 bp)
AATCTGTAAGCTTATCTGGCCCCTG
LOC_Os06g08670
Os.7552.1.S1_at--1036--8731Chr06:4324038..4324062 (25 bp)
TGTAACCGTCTCTGTTGCAGCATCC
LOC_Os06g08670
Os.7552.1.S1_at--739--10571Chr06:4324080..4324104 (25 bp)
TTCGTGAAGTTACATTCCAATGCAT
LOC_Os06g08670
Os.7552.1.S1_at--928--9052Chr06:4324100..4324124 (25 bp)
TGCATTTGTTCCTTAATACTCCCTC
LOC_Os06g08670
Target Sequence 
CGGCATAAGTACTAGAGGTCACACTTCAGCTAAGCTCTTCTGTACATATGCCTTGCCTCATAATTAGAGTTTTACTTGAT
TATATATCATTTTTTTCTTGTGTAAAATTACTCACCGGTTATATATATGTGCACGTATATAGTTGTAACATGAGACTTAT
AGGATATCAAATCTGTAAGCTTATCTGGCCCCTGTAACCGTCTCTGTTGCAGCATCCTTTTTGTTCCATATNNTTTCGTG
AAGTTACATTCCAATGCATTTGTTCCTTAATACTCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis