Browse Element(s) Details


OsAffx.27513.1.S1_s_at

Description tigr:9634.m00808
TID=OsAffx.27513.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=N-hydroxycinnamoylbenzoyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0864011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08600NANA6+4275275..4276141NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08610Os.56006.1.S1_at11/116+4285709..4286860Transferase family protein, expressed
LOC_Os06g08620Os.55265.1.S1_at9/116+4287385..4287951hypothetical protein
LOC_Os06g08630OsAffx.19542.3.S1_x_at10/116+4289192..4293413retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g08640OsAffx.27513.1.S1_s_at11/116+4300561..4302106Transferase family protein, expressed
LOC_Os06g08650OsAffx.27514.1.S1_at11/116+4312313..4314334pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_s_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08660Os.50316.1.S1_at11/116+4314724..4318250pentatricopeptide, putative, expressed
LOC_Os06g08670Os.7552.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed
LOC_Os06g08670OsAffx.15315.1.S1_at11/116+4320684..4324284Phospholipid hydroperoxide glutathione peroxidase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27513.1.S1_s_at--648--8531Chr06:4301017..4301041 (25 bp)
TGGACGCCATGAACCTGCCGAGGAG
LOC_Os06g08640
OsAffx.27513.1.S1_s_at--20--3511Chr06:4300905..4300929 (25 bp)
CATGGGTCCGGCGATCATGTACTAC
LOC_Os06g08640
OsAffx.27513.1.S1_s_at--1082--2011Chr06:4300885..4300909 (25 bp)
ACTACAGCGGGTTCGTGTACGTGAT
LOC_Os06g08640
OsAffx.27513.1.S1_s_at--870--8391Chr06:4300767..4300791 (25 bp)
GGCGCGATTGGCATGACACGAGTAC
LOC_Os06g08640
OsAffx.27513.1.S1_s_at--695--3831Chr06:4300732..4300756 (25 bp)
CTGCGGTTGCATGCATGGTGTCCAC
LOC_Os06g08640
OsAffx.27513.1.S1_s_at--1096--8871Chr06:4300721..4300745 (25 bp)
TGCATGGTGTCCACGTAAACGTTAC
LOC_Os06g08640
OsAffx.27513.1.S1_s_at--200--11Chr06:4300702..4300726 (25 bp)
CGTTACGTACGTTGGCATTTCGTAT
LOC_Os06g08640
OsAffx.27513.1.S1_s_at--1051--291Chr06:4300679..4300703 (25 bp)
ATACGTATACGATCGAGCTTGATGT
LOC_Os06g08640
OsAffx.27513.1.S1_s_at--428--791Chr06:4300645..4300669 (25 bp)
ATGTGTATGCATGTACGTACTGTAC
LOC_Os06g08640
OsAffx.27513.1.S1_s_at--190--2111Chr06:4300606..4300630 (25 bp)
ACATGTAGAATGTTACCGTGCGTAT
LOC_Os06g08640
OsAffx.27513.1.S1_s_at--791--6771Chr06:4300595..4300619 (25 bp)
GTTACCGTGCGTATACATATAAGAT
LOC_Os06g08640
Target Sequence 
TGGACGCCATGAACCTGCCGAGGAGCGGCGTCTCGCGGGCGGACCTCCGCGCCATCAGCTGGCTGGGCATGTCGCTCGCC
GACGCCGACTTCGGGTGGGGCTCGCCGGCGTTCATGGGTCCGGCGATCATGTACTACAGCGGGTTCGTGTACGTGATGAA
CGCGCCGGGGAAGGACGGCGCCGTCGCGCTGGCGCTGTCGCTGGAGCCGGAGAGCATGCCGGAGTTCAGGAAGGTGTTCG
CCGACGAGGTGGCGCGATTGGCATGACACGAGTACACGACGCTCCCTGCGGTTGCATGCATGGTGTCCACGTAAACGTTA
CGTACGTTGGCATTTCGTATACGTATACGATCGAGCTTGATGTAAGTCTGTAATGTGTATGCATGTACGTACTGTACGTA
TATATGTACGTACATGTAGAATGTTACCGTGCGTATACATATAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27513.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis