Browse Element(s) Details


Os.55265.1.S1_at

Description gb:AK107760.1
DB_XREF= gi:32992969
TID=Os.55265.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55265 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-A08, full insert sequence.
FL= gb:AK107760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g086209/11hypothetical protein
LOC_Os03g592402/11Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g413601/11Alpha-1,4-glucan-protein synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08560OsAffx.15313.1.S1_s_at11/116+4248414..4263340ABC transporter family protein, putative, expressed
LOC_Os06g08560Os.30059.2.S1_x_at2/116+4248414..4263340ABC transporter family protein, putative, expressed
LOC_Os06g08570OsAffx.15314.1.S1_at11/116+4265481..4267140pentatricopeptide, putative, expressed
LOC_Os06g08580Os.15299.1.S1_at11/116+4267970..4269615Transferase family protein, expressed
LOC_Os06g08580Os.15299.1.S1_x_at11/116+4267970..4269615Transferase family protein, expressed
LOC_Os06g08590OsAffx.27512.1.S1_at11/116+4270135..4271242hypothetical protein
LOC_Os06g08600NANA6+4275275..4276141NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08610Os.56006.1.S1_at11/116+4285709..4286860Transferase family protein, expressed
LOC_Os06g08620Os.55265.1.S1_at9/116+4287385..4287951hypothetical protein
LOC_Os06g08630OsAffx.19542.3.S1_x_at10/116+4289192..4293413retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g08640OsAffx.27513.1.S1_s_at11/116+4300561..4302106Transferase family protein, expressed
LOC_Os06g08650OsAffx.27514.1.S1_at11/116+4312313..4314334pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0000138cellular_componentGolgi trans cisterna
GO:0005795cellular_componentGolgi stack
GO:0016020cellular_componentmembrane
GO:0016760molecular_functioncellulose synthase (UDP-forming) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55265.1.S1_at--1050--6511Chr06:4287543..4287567 (25 bp)
GATTTTGAATTTGCCTCTTTTTCTT
LOC_Os06g08620
Os.55265.1.S1_at--801--3172Chr06:4287579..4287603 (25 bp)
AATTGGTATCTATCATGGGTTCGTC
LOC_Os06g08620
Os.55265.1.S1_at--735--3492Chr06:4287592..4287616 (25 bp)
CATGGGTTCGTCCTGGTCAAAGTTA
LOC_Os06g08620
Os.55265.1.S1_at--956--10711Chr06:4287677..4287701 (25 bp)
TTGCTCTTGGGCTTATCGTTCAAAG
LOC_Os06g08620
Os.55265.1.S1_at--859--9011Chr06:4287702..4287726 (25 bp)
TGCAAGGTGGCATTCTGATTCAAAA
LOC_Os06g08620
Os.55265.1.S1_at--828--5351Chr06:4287727..4287751 (25 bp)
GAAGATGTCTTTTCTGTGGCTCTGT
LOC_Os06g08620
Os.55265.1.S1_at--252--4811Chr06:4287745..4287769 (25 bp)
GCTCTGTGTGGTTGTGCAAGGCCCT
LOC_Os06g08620
Os.55265.1.S1_at--744--1391NONE
AGACGATCCGGGTGACTGCTTCGAT
NONE
Os.55265.1.S1_at--235--4271Chr06:4287905..4287929 (25 bp)
CCTCGATTAACTTCACCTCAGTGAG
LOC_Os06g08620
Os.55265.1.S1_at--595--1752Chr07:24772006..24772029 (24 bp)
ACCTCAGTGAGATCTGTCTCTGTTA
LOC_Os07g41360
Os.55265.1.S1_at--257--6771Chr06:4287940..4287964 (25 bp)
GTTAAGGTTTGATCTGTGGACACTA
NONE
Target Sequence 
GATTTTGAATTTGCCTCTTTTTCTTTTTCTTTTTTGAATTGGTATCTATCATGGGTTCGTCCTGGTCAAAGTTAAGCGTG
TGTGGCTTCATTTGGGAAGAGGATTTGGGAGGAAGCACGAGCAAGGTGGTAGGTTTGCTCTTGGGCTTATCGTTCAAAGT
GCAAGGTGGCATTCTGATTCAAAAGAAGATGTCTTTTCTGTGGCTCTGTGTGGTTGTGCAAGGCCCTTCTTCCAGCCGTA
CCACCTCATCATCGTCCTGGACGGCGACCCCAAGAAGACGATCCGGGTGACTGCTTCGATGAAGAAGTTTATCTCCAAGA
AGAAGTATATCTACACCATCGACGAGTTCCTCCCCTTCCACCCCTCGATTAACTTCACCTCAGTGAGATCTGTCTCTGTT
AAGGTTTGATCTGTGGACACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis