Browse Element(s) Details


Os.30059.2.S1_x_at

Description gb:AK109356.2
DB_XREF= gi:42821673
TID=Os.30059.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1529_G03.12 (OJ1529_G03.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A05, full insert sequence.
FL= gb:AK059227.1 gb:AK109356.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g604205/11expressed protein
LOC_Os06g085602/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60360NANA1+35244531..35246258Ubiquitin-conjugating enzyme E2-17 kDa, putative
LOC_Os01g60369Os.45173.1.S1_x_at3/111+35248279..35251510retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60380NANA1+35251776..35256194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60389Os.45173.1.S1_x_at3/111+35257254..35260485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60400NANA1+35260751..35261460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60410Os.11479.1.S1_at11/111+35264606..35268683Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os01g60420Os.30059.1.S1_at10/111+35270657..35272985expressed protein
LOC_Os01g60420Os.30059.2.S1_x_at5/111+35270657..35272985expressed protein
LOC_Os01g60420Os.56068.1.S1_x_at1/111+35270657..35272985expressed protein
LOC_Os01g60430Os.35934.1.S1_at11/111+35273474..35275876pentatricopeptide, putative, expressed
LOC_Os01g60440Os.8739.1.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.2.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.3.S1_x_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.26818.2.S1_at1/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60450OsAffx.2373.1.S1_x_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60450OsAffx.2373.1.S1_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60460OsAffx.21784.1.S1_at11/111+35290992..35291414hypothetical protein
LOC_Os01g60470OsAffx.23870.1.S1_at9/111+35295785..35297557hypothetical protein
LOC_Os01g60480NANA1+35297931..35302411retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30059.2.S1_x_at--688--1831Chr01:35272179..35272203 (25 bp)
ACGCGCACCTGCAACAAGCCGGAAT
LOC_Os01g60420
Os.30059.2.S1_x_at--273--5372Chr06:4248615..4248638 (24 bp)
GAAGAGCGCGTCCTGCAACGACGCC
LOC_Os06g08560
Os.30059.2.S1_x_at--774--9372Chr06:4248703..4248727 (25 bp)
TCGAGTCGCAGCTCGTGCAGGCGCT
LOC_Os06g08560
Os.30059.2.S1_x_at--191--7211Chr01:35272475..35272499 (25 bp)
GTCGTCTGCGACAAGTGCTCGGAGA
LOC_Os01g60420
Os.30059.2.S1_x_at--402--1131Chr01:35272488..35272512 (25 bp)
AGTGCTCGGAGATACTGCAGCTGCC
LOC_Os01g60420
Os.30059.2.S1_x_at--707--10831Chr01:35242729..35242753 (25 bp)
TTGGGCTGGGCCATGCCTTTGCACT
NONE
Os.30059.2.S1_x_at--592--4431Chr01:35242738..35242762 (25 bp)
GCCATGCCTTTGCACTCTATTATTA
NONE
Os.30059.2.S1_x_at--506--9031Chr01:35242748..35242772 (25 bp)
TGCACTCTATTATTACTCCGTCTTT
NONE
Os.30059.2.S1_x_at--157--9911NONE
TACTCCGTCTTTCCTAAATCGATCA
NONE
Os.30059.2.S1_x_at--602--2253Chr10:1098143..1098168 (25 bp)
AAATTTCTCAAATTATCGTCATATA
NONE
Os.30059.2.S1_x_at--615--511Chr01:35242817..35242841 (25 bp)
ATCGTCATATAATTGCATGGACACA
NONE
Target Sequence 
ACGCGCACCTGCAACAAGCCGGAATGCCCCCGAAGAGCGCGTCCTGCAACGACGCCGCCACCGGCGGCAGCGGCGGCGGC
GGCGGCGCGTACGCAGCAGCAGNCACGCGGCGCAACTCCCGCCTCATGCGCCGCCTCGAGTCGCAGCTCGTGCAGGCGCT
GCCCAGGGACGGCCTGCGCCGGGACAGGAGCACCTCCTCCTCCTCGTCGGCGTCGAGCAGCCGCCCGGGCGGCGACCGGG
CCAGGGCGGCGGGGCGGAAGCACCACTGCCGCGCTGTGCTGGGCGGCACGCCGTTCGTCGTCTGCGACAAGTGCTCGGAG
ATACTGCAGCTGCCGGCCGCCGTGTCGGCGAACAGGGCGGCCAGGCTGGAGTGCGGCGGGGGCGTTGTCCTGGGCGCTTG
AGAGCTGGGTTGGGTTGGGCTGGGCCATGCCTTTGCACTCTATTATTACTCCGTCTTTCCTAAATCGATCATCATGTAAT
AGAATCTAAAATTTCTCAAATTATCGTCATATAATTGCATGGACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30059.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis