Browse Element(s) Details


OsAffx.23870.1.S1_at

Description gb:NM_191112.1
DB_XREF= gi:34909307
GEN=OJ1529_G03.17
TID=OsAffx.23870.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1529_G03.17 (OJ1529_G03.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g604709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60420Os.30059.1.S1_at10/111+35270657..35272985expressed protein
LOC_Os01g60420Os.30059.2.S1_x_at5/111+35270657..35272985expressed protein
LOC_Os01g60420Os.56068.1.S1_x_at1/111+35270657..35272985expressed protein
LOC_Os01g60430Os.35934.1.S1_at11/111+35273474..35275876pentatricopeptide, putative, expressed
LOC_Os01g60440Os.8739.1.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.2.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.3.S1_x_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.26818.2.S1_at1/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60450OsAffx.2373.1.S1_x_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60450OsAffx.2373.1.S1_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60460OsAffx.21784.1.S1_at11/111+35290992..35291414hypothetical protein
LOC_Os01g60470OsAffx.23870.1.S1_at9/111+35295785..35297557hypothetical protein
LOC_Os01g60480NANA1+35297931..35302411retrotransposon protein, putative, unclassified
LOC_Os01g60490OsAffx.23871.1.S1_at11/111+35308317..35312296WRKY DNA binding domain containing protein, expressed
LOC_Os01g60500NANA1+35314175..35315332hypothetical protein
LOC_Os01g60510OsAffx.23873.1.S1_s_at11/111+35320336..35321132hypothetical protein
LOC_Os01g60510OsAffx.23873.2.S1_at8/111+35320336..35321132hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23870.1.S1_at--891--4071Chr01:35294963..35294987 (25 bp)
CGAGCACGTACAGCCGCCTGTTTGG
NONE
OsAffx.23870.1.S1_at--391--4171Chr01:35294977..35294996 (20 bp)
CGCCTGTTTGGCTGTTTCACCTGCC
NONE
OsAffx.23870.1.S1_at--403--1291Chr01:35297084..35297108 (25 bp)
AGATGCCGGTTCTTCCAGAGCCTTC
LOC_Os01g60470
OsAffx.23870.1.S1_at--580--1671Chr01:35297128..35297152 (25 bp)
AGCCGCTGTGGCCTTCACCGAAGAC
LOC_Os01g60470
OsAffx.23870.1.S1_at--81--5051Chr01:35297179..35297203 (25 bp)
GCAGAGGGCACACGCCTCGTGCTCA
LOC_Os01g60470
OsAffx.23870.1.S1_at--416--7091Chr01:35297230..35297254 (25 bp)
GTCACCAACAGTGCCCGTAGTCAGG
LOC_Os01g60470
OsAffx.23870.1.S1_at--770--6011Chr01:35297307..35297331 (25 bp)
GAGAGAGTGTCAGGTGTCCACCTGT
LOC_Os01g60470
OsAffx.23870.1.S1_at--1018--4352Chr01:35302529..35302553 (25 bp)
CCACCTGTTCCACCTGACGATGATG
NONE
OsAffx.23870.1.S1_at--705--8252Chr01:35302654..35302678 (25 bp)
GGCACGCGAGGAGGATACTCAGACT
NONE
OsAffx.23870.1.S1_at--812--671Chr01:35297481..35297505 (25 bp)
ATGACACACAGAAGACACGTCCAGC
LOC_Os01g60470
OsAffx.23870.1.S1_at--923--5631Chr01:35297494..35297518 (25 bp)
GACACGTCCAGCAAGGCCCAAGAAG
LOC_Os01g60470
Target Sequence 
CGAGCACGTACAGCCGCCTGTTTGGCTGTTTCACCTGCCCCCTCGTCGGCGTCGATCAAGGCTGGNNNNNNNNNTNNCNN
NGNCNNNNNNNNNNNNNNNNNNNNNNNNANCTNNNNNNNNNNTCCAGATGCCGGTTCTTCCAGAGCCTTCTGCTCGTCCT
CGCCAACCCAGCCGCTGTGGCCTTCACCGAAGACGCCCGGTGCCCGTGGCCAGGAGGGAGGCAGAGGGCACACGCCTCGT
GCTCACCTTACCTGACCCAGCCGCCACCGCCGTCACCAACAGTGCCCGTAGTCAGGAGGGAGGCGTGCGGAGGGGAACAC
AGGGGAGGCGGCGACGACGGTAGCAGGCGAGAGAGTGTCAGGTGTCCACCTGTTCCACCTGACGATGATGTCGCTGAAGA
AGAAGAAGAGAAGCTGGCTGAAGAAGAGGAGGAAAAGCTTACTGAAGATGATGGAGAAGAAGAGCAGATAACTGAAGAGG
GCGAGCTGGTGGCACGCGAGGAGGATACTCAGACTAAGGAAGATGACACACAGAAGACACGTCCAGCAAGGCCCAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis