Browse Element(s) Details


OsAffx.2373.1.S1_at

Description tigr:9629.m05941
TID=OsAffx.2373.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=trans-cinnamic acid hydroxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6045011/11Trans-cinnamate 4-monooxygenase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60410Os.11479.1.S1_at11/111+35264606..35268683Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os01g60420Os.30059.1.S1_at10/111+35270657..35272985expressed protein
LOC_Os01g60420Os.30059.2.S1_x_at5/111+35270657..35272985expressed protein
LOC_Os01g60420Os.56068.1.S1_x_at1/111+35270657..35272985expressed protein
LOC_Os01g60430Os.35934.1.S1_at11/111+35273474..35275876pentatricopeptide, putative, expressed
LOC_Os01g60440Os.8739.1.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.2.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.3.S1_x_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.26818.2.S1_at1/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60450OsAffx.2373.1.S1_x_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60450OsAffx.2373.1.S1_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60460OsAffx.21784.1.S1_at11/111+35290992..35291414hypothetical protein
LOC_Os01g60470OsAffx.23870.1.S1_at9/111+35295785..35297557hypothetical protein
LOC_Os01g60480NANA1+35297931..35302411retrotransposon protein, putative, unclassified
LOC_Os01g60490OsAffx.23871.1.S1_at11/111+35308317..35312296WRKY DNA binding domain containing protein, expressed
LOC_Os01g60500NANA1+35314175..35315332hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0016710molecular_functiontrans-cinnamate 4-monooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2373.1.S1_at--238--531Chr01:35289366..35289390 (25 bp)
ATCGCGGAGCTAGGGTGAACCACGG
LOC_Os01g60450
OsAffx.2373.1.S1_at--334--571Chr01:35289337..35289361 (25 bp)
ATCCAGGAGAAGCTGCGCCGGGAGC
LOC_Os01g60450
OsAffx.2373.1.S1_at--1052--1591Chr01:35289327..35289351 (25 bp)
AGCTGCGCCGGGAGCTGGACACGGT
LOC_Os01g60450
OsAffx.2373.1.S1_at--421--9691Chr01:35289282..35289306 (25 bp)
TCACGGAGCCGGACACGCACAGGCT
LOC_Os01g60450
OsAffx.2373.1.S1_at--1011--9391Chr01:35289129..35289153 (25 bp)
TCGTCAACGCGTGGTACCTCGCCAA
LOC_Os01g60450
OsAffx.2373.1.S1_at--1107--1311Chr01:35289045..35289069 (25 bp)
AGAGGAACGTCGAGGCCAACGGCAA
LOC_Os01g60450
OsAffx.2373.1.S1_at--719--6191Chr01:35289044..35289068 (25 bp)
GAGGAACGTCGAGGCCAACGGCAAC
LOC_Os01g60450
OsAffx.2373.1.S1_at--679--3231Chr01:35289029..35289053 (25 bp)
CAACGGCAACGACTTCAGGTACCTG
LOC_Os01g60450
OsAffx.2373.1.S1_at--868--8211Chr01:35289025..35289049 (25 bp)
GGCAACGACTTCAGGTACCTGCCGT
LOC_Os01g60450
OsAffx.2373.1.S1_at--903--5631Chr01:35289019..35289043 (25 bp)
GACTTCAGGTACCTGCCGTCCGGCG
LOC_Os01g60450
OsAffx.2373.1.S1_at--605--1691Chr01:35288878..35288902 (25 bp)
ACCACCGAGAAGGGTGGGCAGTTCA
LOC_Os01g60450
Target Sequence 
ATCGCGGAGCTAGGGTGAACCACGGGGAGATCCAGGAGAAGCTGCGCCGGGAGCTGGACACGGTGCTCGGCCCGGGGCGT
CAGATCACGGAGCCGGACACGCACAGGCTCCCCTACCTGCAGGCCGTGGTCAAGGAGACGCTCCGGCTGCGCATGGCCAT
CCCGCTGCTGGTGCCGCACATGAACCTCCGCGACGCCGAGCTCGCCGGGTACGGCATCCCCGCCGAGAGCAAGGTGCTCG
TCAACGCGTGGTACCTCGCCAACGACCCCGGGCGGTGGCGGCGGCCGGAGGAGTTCCGGCCGGAGAGGTTCCTCGAGGAG
GAGAGGAACGTCGAGGCCAACGGCAACGACTTCAGGTACCTGCCGTCCGGCGCCGGGCGGCGGAGCTGCCCCGGCATCGT
CCTCGCGCTGCCCATCCTCGGCGTCACCATCGGCCGCCTCGTCCAGAACTTCGAGCTGCTGCCGCCGCCCGGGAAGGACA
GGGTCGACACCACCGAGAAGGGTGGGCAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis