Browse Element(s) Details


Os.11479.1.S1_at

Description gb:AK058360.1
DB_XREF= gi:32968378
TID=Os.11479.1
CNT=46
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11479 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ubiquitin conjugating enzyme (OJ1529_G03.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-F04, full insert sequence.
FL= gb:AK058360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6041011/11Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60350Os.31128.1.S1_x_at11/111+35237472..35240602expressed protein
LOC_Os01g60360NANA1+35244531..35246258Ubiquitin-conjugating enzyme E2-17 kDa, putative
LOC_Os01g60369Os.45173.1.S1_x_at3/111+35248279..35251510retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60380NANA1+35251776..35256194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60389Os.45173.1.S1_x_at3/111+35257254..35260485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60400NANA1+35260751..35261460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60410Os.11479.1.S1_at11/111+35264606..35268683Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os01g60420Os.30059.1.S1_at10/111+35270657..35272985expressed protein
LOC_Os01g60420Os.30059.2.S1_x_at5/111+35270657..35272985expressed protein
LOC_Os01g60420Os.56068.1.S1_x_at1/111+35270657..35272985expressed protein
LOC_Os01g60430Os.35934.1.S1_at11/111+35273474..35275876pentatricopeptide, putative, expressed
LOC_Os01g60440Os.8739.1.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.2.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.3.S1_x_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.26818.2.S1_at1/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60450OsAffx.2373.1.S1_x_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60450OsAffx.2373.1.S1_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60460OsAffx.21784.1.S1_at11/111+35290992..35291414hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11479.1.S1_at--439--10871Chr01:35266528..35266552 (25 bp)
TTGGCAGGCGACCATTATGGGTCCT
LOC_Os01g60410
Os.11479.1.S1_at--587--10431Chr01:35266542..35266566 (25 bp)
TTATGGGTCCTCCAGATAGTCCCTA
LOC_Os01g60410
Os.11479.1.S1_at--1115--1251Chr01:35266555..35266579 (25 bp)
AGATAGTCCCTATGCTGGTGGAGTT
LOC_Os01g60410
Os.11479.1.S1_at--297--971Chr01:35267177..35267201 (25 bp)
AGGAGCAATGGAGCCCTGCTTTGAC
LOC_Os01g60410
Os.11479.1.S1_at--933--8851Chr01:35268439..35268463 (25 bp)
TGATGAAACCCACAAGCCCTGAATT
LOC_Os01g60410
Os.11479.1.S1_at--1159--4171Chr01:35268455..35268479 (25 bp)
CCCTGAATTCAAACCTGCTGCTTAA
LOC_Os01g60410
Os.11479.1.S1_at--238--3411Chr01:35268483..35268507 (25 bp)
CAGACAGTCGTGGTAATTGTCCCAA
LOC_Os01g60410
Os.11479.1.S1_at--9--6831Chr01:35268514..35268538 (25 bp)
GTTTATGGGCCATTATTTCCTCCGA
LOC_Os01g60410
Os.11479.1.S1_at--984--191Chr01:35268528..35268552 (25 bp)
ATTTCCTCCGATTTGTTGCTGCCAG
LOC_Os01g60410
Os.11479.1.S1_at--80--9192Chr01:35268547..35268571 (25 bp)
TGCCAGTCGTGTGTGTCAGATCCAT
LOC_Os01g60410
Os.11479.1.S1_at--331--2091Chr01:35268602..35268626 (25 bp)
ACATATGATCATTGCCCGTCGATAA
LOC_Os01g60410
Target Sequence 
TTGGCAGGCGACCATTATGGGTCCTCCAGATAGTCCCTATGCTGGTGGAGTTTTCTTAGTGAATATTCATTTCCCCCCGG
ACTACCCCTTCAAGCCTCCAAAGGTATCTTTTAAGACAAAGGTCTTCCATCCAAACATCAATAGCAATGGAAGCATATGC
CTTGACATTCTTAAGGAGCAATGGAGCCCTGCTTTGACNATTTCTAAGGTGTTGCTTTCGATCTGCTCGCTGCTCACTGA
CCCCAACCCGGACGACCCTCTTGTCCCTGAGATTGCCCACATGTACAAGACGGATCGTCCAAAGTATGAGACGACAGCCC
GCAGCTGGACCCAGAAGTATGCCATGGGATGATGAAACCCACAAGCCCTGAATTCAAACCTGCTGCTTAAATGCAGACAG
TCGTGGTAATTGTCCCAAGAAACTGTTTATGGGCCATTATTTCCTCCGATTTGTTGCTGCCAGTCGTGTGTGTCAGATCC
ATGTAGCATCGTGTCTCGTAGCCCCAACATCAACATATGATCATTGCCCGTCGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis