Browse Element(s) Details


Os.35934.1.S1_at

Description gb:AK064921.1
DB_XREF= gi:32974939
TID=Os.35934.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1529_G03.13 (OJ1529_G03.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000N08, full insert sequence.
FL= gb:AK064921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6043011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60369Os.45173.1.S1_x_at3/111+35248279..35251510retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60380NANA1+35251776..35256194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60389Os.45173.1.S1_x_at3/111+35257254..35260485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60400NANA1+35260751..35261460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60410Os.11479.1.S1_at11/111+35264606..35268683Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os01g60420Os.30059.1.S1_at10/111+35270657..35272985expressed protein
LOC_Os01g60420Os.30059.2.S1_x_at5/111+35270657..35272985expressed protein
LOC_Os01g60420Os.56068.1.S1_x_at1/111+35270657..35272985expressed protein
LOC_Os01g60430Os.35934.1.S1_at11/111+35273474..35275876pentatricopeptide, putative, expressed
LOC_Os01g60440Os.8739.1.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.2.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.3.S1_x_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.26818.2.S1_at1/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60450OsAffx.2373.1.S1_x_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60450OsAffx.2373.1.S1_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60460OsAffx.21784.1.S1_at11/111+35290992..35291414hypothetical protein
LOC_Os01g60470OsAffx.23870.1.S1_at9/111+35295785..35297557hypothetical protein
LOC_Os01g60480NANA1+35297931..35302411retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0031425biological_processchloroplast RNA processing
GO:0031426biological_processpolycistronic mRNA processing
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35934.1.S1_at--578--7631Chr01:35275293..35275317 (25 bp)
GGGACTGCCACTCGTTTCTGAAGAC
LOC_Os01g60430
Os.35934.1.S1_at--697--3091Chr01:35275334..35275358 (25 bp)
AATAGAGCGTTTCTCGTCAGGGACG
LOC_Os01g60430
Os.35934.1.S1_at--675--1671Chr01:35275361..35275385 (25 bp)
AGCCGGTTCCATCGCTTCGAGAATG
LOC_Os01g60430
Os.35934.1.S1_at--1110--2531Chr01:35275452..35275476 (25 bp)
AACTCAAACTTTGGTGTGCCTGGTG
LOC_Os01g60430
Os.35934.1.S1_at--282--2691Chr01:35275499..35275523 (25 bp)
AAGCTGGTTGAGATCTGCCGCGGAA
LOC_Os01g60430
Os.35934.1.S1_at--502--1331Chr01:35275563..35275587 (25 bp)
AGAGAAGCCGTCGAACCAGTGCCGT
LOC_Os01g60430
Os.35934.1.S1_at--626--1131Chr01:35275580..35275604 (25 bp)
AGTGCCGTCCGATCTCGAGAGTGAG
LOC_Os01g60430
Os.35934.1.S1_at--129--1891Chr01:35275612..35275636 (25 bp)
ACGTTCGGCGAACTGTCACTCAGAA
LOC_Os01g60430
Os.35934.1.S1_at--697--2231Chr01:35275754..35275778 (25 bp)
ACAATGATCTCGTGCAGTCGTGTGC
LOC_Os01g60430
Os.35934.1.S1_at--966--1131Chr01:35275769..35275793 (25 bp)
AGTCGTGTGCCGTTAGCTAAGTGTT
LOC_Os01g60430
Os.35934.1.S1_at--732--7411Chr01:35275789..35275813 (25 bp)
GTGTTGTCAGGTTCTTTGTGCAGGA
LOC_Os01g60430
Target Sequence 
GGGACTGCCACTCGTTTCTGAAGACGATCTCGGAGTTGACAAATAGAGCGTTTCTCGTCAGGGACGCGAGCCGGTTCCAT
CGCTTCGAGAATGGGGCCTGCTCCTGCAGAGACTACTGGTGAAGAATTTGGTGTGCCTGGTGAAGGAAACACAAATGGGA
ACTCAAACTTTGGTGTGCCTGGTGAAGGAAAGACAAATGGGAATACAAGCTGGTTGAGATCTGCCGCGGAACGTGATGTT
GGCTACCGGCAAACCGTTGGACAGCAAGACAGAGAAGCCGTCGAACCAGTGCCGTCCGATCTCGAGAGTGAGCAGGAAGA
CGTTCGGCGAACTGTCACTCAGAACCGGAGTTTAGGCTGGAAGCGCAAGCCGATGGAACAATTCCGATCGGTAGAGGAGA
CAAAAAAAAAAATCAAAACAAAGGCCTGAAATTTTGCATTTTTTACACGCCCCCTGATCTAACAATGATCTCGTGCAGTC
GTGTGCCGTTAGCTAAGTGTTGTCAGGTTCTTTGTGCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis