Browse Element(s) Details


Os.30059.1.S1_at

Description gb:AK106919.1
DB_XREF= gi:32992128
TID=Os.30059.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1529_G03.12 (OJ1529_G03.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B03, full insert sequence.
FL= gb:AK106919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6042010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60360NANA1+35244531..35246258Ubiquitin-conjugating enzyme E2-17 kDa, putative
LOC_Os01g60369Os.45173.1.S1_x_at3/111+35248279..35251510retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60380NANA1+35251776..35256194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60389Os.45173.1.S1_x_at3/111+35257254..35260485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60400NANA1+35260751..35261460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60410Os.11479.1.S1_at11/111+35264606..35268683Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os01g60420Os.30059.1.S1_at10/111+35270657..35272985expressed protein
LOC_Os01g60420Os.30059.2.S1_x_at5/111+35270657..35272985expressed protein
LOC_Os01g60420Os.56068.1.S1_x_at1/111+35270657..35272985expressed protein
LOC_Os01g60430Os.35934.1.S1_at11/111+35273474..35275876pentatricopeptide, putative, expressed
LOC_Os01g60440Os.8739.1.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.2.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.3.S1_x_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.26818.2.S1_at1/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60450OsAffx.2373.1.S1_x_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60450OsAffx.2373.1.S1_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60460OsAffx.21784.1.S1_at11/111+35290992..35291414hypothetical protein
LOC_Os01g60470OsAffx.23870.1.S1_at9/111+35295785..35297557hypothetical protein
LOC_Os01g60480NANA1+35297931..35302411retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30059.1.S1_at--377--7651Chr01:35272563..35272587 (25 bp)
GGGAGACGCTGTCCATCAAGCTGCC
LOC_Os01g60420
Os.30059.1.S1_at--505--5751Chr01:35272618..35272642 (25 bp)
GACGGACCGGCCCAAGAAGATATTC
LOC_Os01g60420
Os.30059.1.S1_at--280--4131Chr01:35272769..35272793 (25 bp)
CGCATGCTCGGGTACAGCACGGTGA
LOC_Os01g60420
Os.30059.1.S1_at--768--1391Chr01:35272784..35272808 (25 bp)
AGCACGGTGAGCTCGGTTTTCCGGA
LOC_Os01g60420
Os.30059.1.S1_at--1110--4231Chr01:35272810..35272834 (25 bp)
CCGGCGGTACGGAGAGCAACACTGA
LOC_Os01g60420
Os.30059.1.S1_at--310--2471Chr01:35272827..35272851 (25 bp)
AACACTGAGCTGAGCATTCTTTTGA
LOC_Os01g60420
Os.30059.1.S1_at--1082--5891Chr01:35272833..35272857 (25 bp)
GAGCTGAGCATTCTTTTGATTTGAT
LOC_Os01g60420
Os.30059.1.S1_at--1144--10491Chr01:35272865..35272889 (25 bp)
TTAATTCCCTGTCCTTTTTATCAGA
LOC_Os01g60420
Os.30059.1.S1_at--36--7271Chr01:35272875..35272899 (25 bp)
GTCCTTTTTATCAGATGGCATTGCA
LOC_Os01g60420
Os.30059.1.S1_at--993--8271Chr01:35272891..35272915 (25 bp)
GGCATTGCAATTTTGATACACAATT
LOC_Os01g60420
Os.30059.1.S1_at--536--2231NONE
AAATTGTAAACGATTCTTCATCCTT
NONE
Target Sequence 
GGGAGACGCTGTCCATCAAGCTGCCGGCGGCGGCGGCGGCGGCGGCGAGCGGCTCGACGGACCGGCCCAAGAAGATATTC
TCCGCGCCGCAGCCCGCCGTTCGCCGGCTGGATGACGACGACGCGGGGGAGGAGCACGCGTCCGCGAGGAGCAACCTGAG
CGGCGACCAGCGATGGCCGGCGTCGCCGGCCGAAGGGCCGCTCCACCGCATGCTCGGGTACAGCACGGTGAGCTCGGTTT
TCCGGAGCCGGCGGTACGGAGAGCAACACTGAGCTGAGCATTCTTTTGATTTGATTTTTTTTTTAATTCCCTGTCCTTTT
TATCAGATGGCATTGCAATTTTGATACACAATTGCATTGTAAAAATTGTAAACGATTCTTCATCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis