Browse Element(s) Details


Os.56068.1.S1_x_at

Description gb:AK109202.1
DB_XREF= gi:32994411
TID=Os.56068.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-C04, full insert sequence.
FL= gb:AK109202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g604201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60360NANA1+35244531..35246258Ubiquitin-conjugating enzyme E2-17 kDa, putative
LOC_Os01g60369Os.45173.1.S1_x_at3/111+35248279..35251510retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60380NANA1+35251776..35256194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60389Os.45173.1.S1_x_at3/111+35257254..35260485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60400NANA1+35260751..35261460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60410Os.11479.1.S1_at11/111+35264606..35268683Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os01g60420Os.30059.1.S1_at10/111+35270657..35272985expressed protein
LOC_Os01g60420Os.30059.2.S1_x_at5/111+35270657..35272985expressed protein
LOC_Os01g60420Os.56068.1.S1_x_at1/111+35270657..35272985expressed protein
LOC_Os01g60430Os.35934.1.S1_at11/111+35273474..35275876pentatricopeptide, putative, expressed
LOC_Os01g60440Os.8739.1.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.2.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.3.S1_x_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.26818.2.S1_at1/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60450OsAffx.2373.1.S1_x_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60450OsAffx.2373.1.S1_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60460OsAffx.21784.1.S1_at11/111+35290992..35291414hypothetical protein
LOC_Os01g60470OsAffx.23870.1.S1_at9/111+35295785..35297557hypothetical protein
LOC_Os01g60480NANA1+35297931..35302411retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56068.1.S1_x_at--101--8331Chr06:4247936..4247960 (25 bp)
GGCTCCCTACACAGCATTTGATCGG
NONE
Os.56068.1.S1_x_at--340--3912Chr06:4247974..4247998 (25 bp)
CTGGTTCAAGAAGCGGCGAGCAATC
NONE
Os.56068.1.S1_x_at--404--5471Chr06:4248042..4248066 (25 bp)
GAACTCCGGCCGATGTCGCGGATAA
NONE
Os.56068.1.S1_x_at--49--9311Chr06:4248057..4248081 (25 bp)
TCGCGGATAACCAGGCGGCCGATGA
NONE
Os.56068.1.S1_x_at--600--7991Chr06:4248104..4248128 (25 bp)
GGATGATGGATCGAGCTATGGTTTA
NONE
Os.56068.1.S1_x_at--244--4871Chr06:4248118..4248139 (22 bp)
GCTATGGTTTAGACAACGACGTCCG
NONE
Os.56068.1.S1_x_at--417--7251Chr06:4248141..4248163 (23 bp)
GTCCGACGTCTGCTGCCGCGAGCTA
NONE
Os.56068.1.S1_x_at--86--4171Chr06:4248178..4248202 (25 bp)
CGCCTCTGAGCTCCCAAGAACTGGA
NONE
Os.56068.1.S1_x_at--21--952Chr06:4248202..4248226 (25 bp)
AGGAATCTGTAGACCTCCCATTGAC
NONE
Os.56068.1.S1_x_at--690--9311Chr06:4248217..4248241 (25 bp)
TCCCATTGACGTTCTGATGCTGTCT
NONE
Os.56068.1.S1_x_at--672--9492Chr06:4248239..4248263 (25 bp)
TCTGCCTCCCAATTTCAGCCTGAAA
NONE
Target Sequence 
GGCTCCCTACACAGCATTTGATCGGGGCAGCATTAGGACTGGTTCAAGAAGCGGCGAGCAATCGGGCGAAGAGAGAGGTG
GCTCGCCGATGCACAGCCGCATCAGCGAACTCCGGCCGATGTCGCGGATAACCAGGCGGCCGATGAGCGGCGACATGGGT
GTGTTCAGGGATGATGGATCGAGCTATGGTTTAGACAACGACGTCCGACGTCTGCTGCCGCGAGCTACCGCCGCCGGGCG
TCGCCTCTGAGCTCCCAAGAACTGGAGGAATCTGTAGACCTCCCATTGACGTTCTGATGCTGTCTGCCTCCCAATTTCAG
CCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56068.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis