Browse Element(s) Details


OsAffx.23871.1.S1_at

Description tigr:9629.m05945
TID=OsAffx.23871.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6049011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60440Os.8739.1.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.2.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.3.S1_x_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.26818.2.S1_at1/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60450OsAffx.2373.1.S1_x_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60450OsAffx.2373.1.S1_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60460OsAffx.21784.1.S1_at11/111+35290992..35291414hypothetical protein
LOC_Os01g60470OsAffx.23870.1.S1_at9/111+35295785..35297557hypothetical protein
LOC_Os01g60480NANA1+35297931..35302411retrotransposon protein, putative, unclassified
LOC_Os01g60490OsAffx.23871.1.S1_at11/111+35308317..35312296WRKY DNA binding domain containing protein, expressed
LOC_Os01g60500NANA1+35314175..35315332hypothetical protein
LOC_Os01g60510OsAffx.23873.1.S1_s_at11/111+35320336..35321132hypothetical protein
LOC_Os01g60510OsAffx.23873.2.S1_at8/111+35320336..35321132hypothetical protein
LOC_Os01g60520OsAffx.21781.1.S1_at11/111+35323641..35330075WRKY DNA binding domain containing protein
LOC_Os01g60530Os.8248.2.S1_x_at11/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_x_at10/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_at7/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60540OsAffx.21780.1.S1_at11/111+35335715..35337947WRKY DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23871.1.S1_at--1074--9891Chr01:35311718..35311742 (25 bp)
TACTACAGGTGCACGTACCATCAGG
LOC_Os01g60490
OsAffx.23871.1.S1_at--213--971Chr01:35311740..35311764 (25 bp)
AGGACCATGGCTGTCCAGCGAGCAA
LOC_Os01g60490
OsAffx.23871.1.S1_at--310--8851Chr01:35311809..35311833 (25 bp)
TGATCTACACCAACGAGCACACATG
LOC_Os01g60490
OsAffx.23871.1.S1_at--1077--1471Chr01:35311841..35311865 (25 bp)
AGCAATTCTGCCTCCGATTACATGG
LOC_Os01g60490
OsAffx.23871.1.S1_at--380--71Chr01:35311889..35311913 (25 bp)
ATTGCCGACGCCTCCTTGAGAAAGG
LOC_Os01g60490
OsAffx.23871.1.S1_at--630--7731Chr01:35311945..35311969 (25 bp)
GGTGGAAACACCTCGCCTGATGCAT
LOC_Os01g60490
OsAffx.23871.1.S1_at--1017--9671Chr01:35312046..35312070 (25 bp)
TCACCGTCATCAGAGGCTGTCACAT
LOC_Os01g60490
OsAffx.23871.1.S1_at--149--4731Chr01:35312081..35312105 (25 bp)
GCTGGTAATAATAGCGCCGCTGCTT
LOC_Os01g60490
OsAffx.23871.1.S1_at--37--8371Chr01:35312128..35312152 (25 bp)
GGCGGTGGCCAGAAGCGACCATTAC
LOC_Os01g60490
OsAffx.23871.1.S1_at--676--611Chr01:35312163..35312187 (25 bp)
ATGCGATTTCGCCTGAATTGTTGCC
LOC_Os01g60490
OsAffx.23871.1.S1_at--736--4091Chr01:35312194..35312218 (25 bp)
CGACGACCTGACACTGGACTTCATG
LOC_Os01g60490
Target Sequence 
TACTACAGGTGCACGTACCATCAGGACCATGGCTGTCCAGCGAGCAAGCACGTGGAGCAGCACAACTCGGAGGACCCGCC
TTTGTTCCGGGTGATCTACACCAACGAGCACACATGCGGCACCAGCAATTCTGCCTCCGATTACATGGCTTCCTCCATGC
AAATCCAGCAGATTGCCGACGCCTCCTTGAGAAAGGCACAGGCGGCGGAAAGACTGAGAAAGGCAGAGGTGGAAACACCT
CGCCTGATGCATTCTCCTCCTCCTCGCTGCAGCGGCGGCTACAACATGGCGATGAAAGAAGAGAAGGATGTGATCGTCTC
CTCGCTGCTCACCGTCATCAGAGGCTGTCACATTGCAGAATCAGCTGGTAATAATAGCGCCGCTGCTTTGCCGGTAAACA
GGCCGCCGCCGGCGGTGGCCAGAAGCGACCATTACAGCTGCAGCTATGCGATTTCGCCTGAATTGTTGCCGGCGTCCGAC
GACCTGACACTGGACTTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis