Browse Element(s) Details


Os.8248.1.S1_at

Description gb:AK106944.1
DB_XREF= gi:32992153
TID=Os.8248.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0703B11.9 (P0703B11.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-D09, full insert sequence.
FL= gb:AK106944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g605307/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60490OsAffx.23871.1.S1_at11/111+35308317..35312296WRKY DNA binding domain containing protein, expressed
LOC_Os01g60500NANA1+35314175..35315332hypothetical protein
LOC_Os01g60510OsAffx.23873.1.S1_s_at11/111+35320336..35321132hypothetical protein
LOC_Os01g60510OsAffx.23873.2.S1_at8/111+35320336..35321132hypothetical protein
LOC_Os01g60520OsAffx.21781.1.S1_at11/111+35323641..35330075WRKY DNA binding domain containing protein
LOC_Os01g60530Os.8248.2.S1_x_at11/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_x_at10/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_at7/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60540OsAffx.21780.1.S1_at11/111+35335715..35337947WRKY DNA binding domain containing protein
LOC_Os01g60549NANA1+35339515..35340129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60560OsAffx.21779.1.S1_at11/111+35343151..35344696retrotransposon protein, putative, unclassified
LOC_Os01g60569NANA1+35347231..35347755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60580OsAffx.21778.2.S1_x_at4/111+35351155..35352003transposon protein, putative, Pong sub-class
LOC_Os01g60590OsAffx.8070.1.S1_x_at11/111+35352452..35354519transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8248.1.S1_at--876--251Chr01:35330792..35330816 (25 bp)
ATATGACTACTGTAGTGTTGTAATA
LOC_Os01g60530
Os.8248.1.S1_at--971--6911Chr01:35330759..35330783 (25 bp)
GTATGGACTTTTAAAATTGTGCACT
LOC_Os01g60530
Os.8248.1.S1_at--1158--5671Chr01:35330754..35330778 (25 bp)
GACTTTTAAAATTGTGCACTGGGAC
LOC_Os01g60530
Os.8248.1.S1_at--540--7291Chr01:35330741..35330765 (25 bp)
GTGCACTGGGACTTTTAATATGTAT
LOC_Os01g60530
Os.8248.1.S1_at--220--7631Chr01:35330734..35330758 (25 bp)
GGGACTTTTAATATGTATGTGGACA
LOC_Os01g60530
Os.8248.1.S1_at--362--10311Chr01:35330701..35330725 (25 bp)
TTTCTATGCTATGGACTTTTAATAA
LOC_Os01g60530
Os.8248.1.S1_at--253--10271NONE
TTTGTTGATATGGTACGTGCAATTT
NONE
Os.8248.1.S1_at--580--6491NONE
GATATGGTACGTGCAATTTTGCGAG
NONE
Os.8248.1.S1_at--786--7831NONE
GGTACGTGCAATTTTGCGAGCTATT
NONE
Os.8248.1.S1_at--352--1911NONE
ACGTGCAATTTTGCGAGCTATTGAT
NONE
Os.8248.1.S1_at--483--171Chr01:35330640..35330664 (25 bp)
ATTTTGCGAGCTATTGATACATTTG
LOC_Os01g60530
Target Sequence 
ATATGACTACTGTAGTGTTGTAATATTTGTGTNGTATGGACTTTTAAAATTGTGCACTGGGACTTTTAATATGTATGTGG
ACATTTTAATNTTTCTATGCTATGGACTTTTAATAATTATTTGGACATTTTTTTGTTGATATGGTACGTGCAATTTTGCG
AGCTATTGATACATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis