Browse Element(s) Details


Os.8248.2.S1_x_at

Description gb:NM_190347.1
DB_XREF= gi:34907777
GEN=P0703B11.9
TID=Os.8248.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0703B11.9 (P0703B11.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0703B11.9 (P0703B11.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6053011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60490OsAffx.23871.1.S1_at11/111+35308317..35312296WRKY DNA binding domain containing protein, expressed
LOC_Os01g60500NANA1+35314175..35315332hypothetical protein
LOC_Os01g60510OsAffx.23873.1.S1_s_at11/111+35320336..35321132hypothetical protein
LOC_Os01g60510OsAffx.23873.2.S1_at8/111+35320336..35321132hypothetical protein
LOC_Os01g60520OsAffx.21781.1.S1_at11/111+35323641..35330075WRKY DNA binding domain containing protein
LOC_Os01g60530Os.8248.2.S1_x_at11/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_x_at10/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_at7/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60540OsAffx.21780.1.S1_at11/111+35335715..35337947WRKY DNA binding domain containing protein
LOC_Os01g60549NANA1+35339515..35340129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60560OsAffx.21779.1.S1_at11/111+35343151..35344696retrotransposon protein, putative, unclassified
LOC_Os01g60569NANA1+35347231..35347755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60580OsAffx.21778.2.S1_x_at4/111+35351155..35352003transposon protein, putative, Pong sub-class
LOC_Os01g60590OsAffx.8070.1.S1_x_at11/111+35352452..35354519transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8248.2.S1_x_at--1033--8651Chr01:35331824..35331848 (25 bp)
TGTGAGTCGGACACTGGGCTTACGC
LOC_Os01g60530
Os.8248.2.S1_x_at--307--91Chr01:35331750..35331774 (25 bp)
ATTCCTCACCGTATGGAGGTGGCCG
LOC_Os01g60530
Os.8248.2.S1_x_at--631--9191Chr01:35331626..35331650 (25 bp)
TGCCACCGTCTCTGAAGTCAACTTG
LOC_Os01g60530
Os.8248.2.S1_x_at--67--2831Chr01:35331612..35331636 (25 bp)
AAGTCAACTTGGACGTCGACTCCGA
LOC_Os01g60530
Os.8248.2.S1_x_at--117--4111Chr01:35331590..35331614 (25 bp)
CGACAACGTCGAAGATGCCGCCGAG
LOC_Os01g60530
Os.8248.2.S1_x_at--600--4511Chr01:35331571..35331595 (25 bp)
GCCGAGCTCCAAGAAATTTTCCAAA
LOC_Os01g60530
Os.8248.2.S1_x_at--967--1311Chr01:35331018..35331042 (25 bp)
AGAGGACAATACCAGCTTGCTGTGT
LOC_Os01g60530
Os.8248.2.S1_x_at--474--8151Chr01:35330966..35330990 (25 bp)
GGAAACTGCGTGAATGGACTCATGC
LOC_Os01g60530
Os.8248.2.S1_x_at--521--7651Chr01:35330926..35330950 (25 bp)
GGGAGATTATCGCTGCTTATCATGC
LOC_Os01g60530
Os.8248.2.S1_x_at--660--2631Chr01:35330894..35330918 (25 bp)
AACCTGCGGCATGGTAGATCCCAAA
LOC_Os01g60530
Os.8248.2.S1_x_at--720--6591Chr01:35330842..35330866 (25 bp)
GATTGTGGCAATTCATTCAAACCCT
LOC_Os01g60530
Target Sequence 
TGTGAGTCGGACACTGGGCTTACGCTCGGCCCGCCCTGCTCCATGTGGCCGAGGCGCCACGGCAGCTCGCGCCAATTCCT
CACCGTATGGAGGTGGCCGTTCGGCGCCCGCGGCCGGAGCCAGGGGCCGTGGTGGTGGTCGAGGCACGCAGGCGACCGGA
GCCAGGGGCCGTGGTGGTCGTCGATCCACATCCACGGCTGCCACCGTCTCTGAAGTCAACTTGGACGTCGACTCCGACAA
CGTCGAAGATGCCGCCGAGCTCCAAGAAATTTTCCAAAATCATGGGAAGGTTAAACCTGACAGGGCCAATTGGACAGAGG
ACAATACCAGCTTGCTGTGTGAAATTTGGGTTGACCAGATCAATAAGGGAAACTGCGTGAATGGACTCATGCAGAAGACT
GGGATGAGGGAGATTATCGCTGCTTATCATGCAGCAACCAACCTGCGGCATGGTAGATCCCAAATTACTAATAGGATTAG
GCAACTGAAGGGATTGTGGCAATTCATTCAAACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8248.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis