Browse Element(s) Details


OsAffx.23873.1.S1_s_at

Description gb:NM_190345.1
DB_XREF= gi:34907773
GEN=P0703B11.7
TID=OsAffx.23873.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0703B11.7 (P0703B11.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6051011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60470OsAffx.23870.1.S1_at9/111+35295785..35297557hypothetical protein
LOC_Os01g60480NANA1+35297931..35302411retrotransposon protein, putative, unclassified
LOC_Os01g60490OsAffx.23871.1.S1_at11/111+35308317..35312296WRKY DNA binding domain containing protein, expressed
LOC_Os01g60500NANA1+35314175..35315332hypothetical protein
LOC_Os01g60510OsAffx.23873.1.S1_s_at11/111+35320336..35321132hypothetical protein
LOC_Os01g60510OsAffx.23873.2.S1_at8/111+35320336..35321132hypothetical protein
LOC_Os01g60520OsAffx.21781.1.S1_at11/111+35323641..35330075WRKY DNA binding domain containing protein
LOC_Os01g60530Os.8248.2.S1_x_at11/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_x_at10/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_at7/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60540OsAffx.21780.1.S1_at11/111+35335715..35337947WRKY DNA binding domain containing protein
LOC_Os01g60549NANA1+35339515..35340129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60560OsAffx.21779.1.S1_at11/111+35343151..35344696retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23873.1.S1_s_at--754--1871Chr01:35320436..35320460 (25 bp)
ACGAGGAGACTGTACCCGGTGGATC
LOC_Os01g60510
OsAffx.23873.1.S1_s_at--920--7711Chr01:35320453..35320477 (25 bp)
GGTGGATCCAGCCTCACAACGACGA
LOC_Os01g60510
OsAffx.23873.1.S1_s_at--705--1952Chr01:35320477..35320896 (25 bp)
ACTGGCGTGAAAACCACATCCTGGT
LOC_Os01g60510
OsAffx.23873.1.S1_s_at--434--2091Chr01:35320887..35320911 (25 bp)
ACATCCTGGTTTACCGGAGTGGGCG
LOC_Os01g60510
OsAffx.23873.1.S1_s_at--906--10771Chr01:35320924..35320948 (25 bp)
TTGATGTCGCGACCTTCCTAGAGGC
LOC_Os01g60510
OsAffx.23873.1.S1_s_at--1042--10031Chr01:35320942..35320966 (25 bp)
TAGAGGCTCGTTTTCGAAGGACCAT
LOC_Os01g60510
OsAffx.23873.1.S1_s_at--819--10631Chr01:35320954..35320978 (25 bp)
TTCGAAGGACCATTCCCAAGCCAAT
LOC_Os01g60510
OsAffx.23873.1.S1_s_at--687--2651Chr01:35320971..35320995 (25 bp)
AAGCCAATCTCTTCTTCAGACTTTT
LOC_Os01g60510
OsAffx.23873.1.S1_s_at--833--3411Chr01:35320987..35321011 (25 bp)
CAGACTTTTGTTTATCTTGCAGTGG
LOC_Os01g60510
OsAffx.23873.1.S1_s_at--112--10171Chr01:35320999..35321023 (25 bp)
TATCTTGCAGTGGTGCTTCTGACTG
LOC_Os01g60510
OsAffx.23873.1.S1_s_at--787--10591Chr01:35321015..35321039 (25 bp)
TTCTGACTGCCACAAGATGCCTATG
LOC_Os01g60510
Target Sequence 
ACGAGGAGACTGTACCCGGTGGATCCAGCCTCACAACGACGACTGGCGTGAAAACCACATCCTGGTTTACCGGAGTGGGC
GACGGGAACGTTCTTGATGTCGCGACCTTCCTAGAGGCTCGTTTTCGAAGGACCATTCCCAAGCCAATCTCTTCTTCAGA
CTTTTGTTTATCTTGCAGTGGTGCTTCTGACTGCCACAAGATGCCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23873.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis