Browse Element(s) Details


OsAffx.21781.1.S1_at

Description tigr:9629.m05948
TID=OsAffx.21781.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6052011/11WRKY DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60480NANA1+35297931..35302411retrotransposon protein, putative, unclassified
LOC_Os01g60490OsAffx.23871.1.S1_at11/111+35308317..35312296WRKY DNA binding domain containing protein, expressed
LOC_Os01g60500NANA1+35314175..35315332hypothetical protein
LOC_Os01g60510OsAffx.23873.1.S1_s_at11/111+35320336..35321132hypothetical protein
LOC_Os01g60510OsAffx.23873.2.S1_at8/111+35320336..35321132hypothetical protein
LOC_Os01g60520OsAffx.21781.1.S1_at11/111+35323641..35330075WRKY DNA binding domain containing protein
LOC_Os01g60530Os.8248.2.S1_x_at11/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_x_at10/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_at7/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60540OsAffx.21780.1.S1_at11/111+35335715..35337947WRKY DNA binding domain containing protein
LOC_Os01g60549NANA1+35339515..35340129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60560OsAffx.21779.1.S1_at11/111+35343151..35344696retrotransposon protein, putative, unclassified
LOC_Os01g60569NANA1+35347231..35347755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60580OsAffx.21778.2.S1_x_at4/111+35351155..35352003transposon protein, putative, Pong sub-class
LOC_Os01g60590OsAffx.8070.1.S1_x_at11/111+35352452..35354519transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21781.1.S1_at--949--611Chr01:35329505..35329529 (25 bp)
ATGCTCTTACCGTGAGGACAGACAG
LOC_Os01g60520
OsAffx.21781.1.S1_at--423--6191Chr01:35329518..35329542 (25 bp)
GAGGACAGACAGTGCCTTGCCTCCA
LOC_Os01g60520
OsAffx.21781.1.S1_at--1070--1031Chr01:35329584..35329608 (25 bp)
AGGGTCACCTACACGTACGAGCACA
LOC_Os01g60520
OsAffx.21781.1.S1_at--124--9611Chr01:35329730..35329754 (25 bp)
TCATCAGCAGCAGACCGAGCGAGAA
LOC_Os01g60520
OsAffx.21781.1.S1_at--588--1471Chr01:35329779..35329803 (25 bp)
AGAAGGCCATTCATGATGCTGAGCT
LOC_Os01g60520
OsAffx.21781.1.S1_at--991--5911Chr01:35329799..35329823 (25 bp)
GAGCTTCGATTCTAGTAGCAGCCAT
LOC_Os01g60520
OsAffx.21781.1.S1_at--905--2591Chr01:35329950..35329974 (25 bp)
AACGACGGAGGCGACCTGTTCTCGA
LOC_Os01g60520
OsAffx.21781.1.S1_at--982--10551Chr01:35329968..35329992 (25 bp)
TTCTCGACGTGGGACGCGCTCAGGT
LOC_Os01g60520
OsAffx.21781.1.S1_at--760--1811Chr01:35329981..35330005 (25 bp)
ACGCGCTCAGGTATGGTTTGGACTA
LOC_Os01g60520
OsAffx.21781.1.S1_at--24--6871Chr01:35329996..35330020 (25 bp)
GTTTGGACTATGACCACGGGCACCT
LOC_Os01g60520
OsAffx.21781.1.S1_at--881--3971Chr01:35330012..35330036 (25 bp)
CGGGCACCTTGGTAACCATGTTTAT
LOC_Os01g60520
Target Sequence 
ATGCTCTTACCGTGAGGACAGACAGTGCCTTGCCTCCAAGCTGGTGCAGCAGGAGAACGACGACGACCCGCCACTGTACA
GGGTCACCTACACGTACGAGCACACCTGCAACACCACGCCCGTCCCGACCCCCGACGTCGTGGCCGAGCAGCCGCCGCCG
GGCGCCGCCGGCGACGCGTACCTCCTCAGGTTCGGCTCCTCCGCTGGCGGCGGCGGCGGCGGCGCTCATCAGCAGCAGAC
CGAGCGAGAACGACAGCAGCAAAATACAGCGAGAAGAAGGCCATTCATGATGCTGAGCTTCGATTCTAGTAGCAGCCATC
AGCTGCACGAGCAGCCGCACGCGTTCCCTCCCGACGGCCAGCTGCCGGCCACGGCCGCGGCCGCGTCGCCGTCGTCGTTC
ACGGCAGCCGAGGCGTTGGCGGCGCCGCCGCTCACGACGACGATGAACGACGGAGGCGACCTGTTCTCGACGTGGGACGC
GCTCAGGTATGGTTTGGACTATGACCACGGGCACCTTGGTAACCATGTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis