Browse Element(s) Details


OsAffx.23873.2.S1_at

Description tigr:9629.m05947
TID=OsAffx.23873.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g605108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60470OsAffx.23870.1.S1_at9/111+35295785..35297557hypothetical protein
LOC_Os01g60480NANA1+35297931..35302411retrotransposon protein, putative, unclassified
LOC_Os01g60490OsAffx.23871.1.S1_at11/111+35308317..35312296WRKY DNA binding domain containing protein, expressed
LOC_Os01g60500NANA1+35314175..35315332hypothetical protein
LOC_Os01g60510OsAffx.23873.1.S1_s_at11/111+35320336..35321132hypothetical protein
LOC_Os01g60510OsAffx.23873.2.S1_at8/111+35320336..35321132hypothetical protein
LOC_Os01g60520OsAffx.21781.1.S1_at11/111+35323641..35330075WRKY DNA binding domain containing protein
LOC_Os01g60530Os.8248.2.S1_x_at11/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_x_at10/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_at7/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60540OsAffx.21780.1.S1_at11/111+35335715..35337947WRKY DNA binding domain containing protein
LOC_Os01g60549NANA1+35339515..35340129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60560OsAffx.21779.1.S1_at11/111+35343151..35344696retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23873.2.S1_at--162--9491Chr01:35321048..35321072 (25 bp)
TCTGCGTGGGGGAGAATGGATCCAT
LOC_Os01g60510
OsAffx.23873.2.S1_at--39--7652Chr01:35321057..35321081 (25 bp)
GGGAGAATGGATCCATCTTGTCTCT
LOC_Os01g60510
OsAffx.23873.2.S1_at--364--8071Chr01:35321058..35321082 (25 bp)
GGAGAATGGATCCATCTTGTCTCTC
LOC_Os01g60510
OsAffx.23873.2.S1_at--142--5971Chr01:35321059..35321083 (25 bp)
GAGAATGGATCCATCTTGTCTCTCG
LOC_Os01g60510
OsAffx.23873.2.S1_at--363--1471Chr01:35321060..35321084 (25 bp)
AGAATGGATCCATCTTGTCTCTCGT
LOC_Os01g60510
OsAffx.23873.2.S1_at--347--5291Chr01:35321061..35321085 (25 bp)
GAATGGATCCATCTTGTCTCTCGTT
LOC_Os01g60510
OsAffx.23873.2.S1_at--566--2971Chr01:35321062..35321086 (25 bp)
AATGGATCCATCTTGTCTCTCGTTC
LOC_Os01g60510
OsAffx.23873.2.S1_at--612--831Chr01:35321063..35321087 (25 bp)
ATGGATCCATCTTGTCTCTCGTTCT
LOC_Os01g60510
Target Sequence 
TCTGCGTGGGGGAGAATGGATCCATCTTGTCTCTCGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23873.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis