Browse Element(s) Details


OsAffx.21780.1.S1_at

Description tigr:9629.m05950
TID=OsAffx.21780.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6054011/11WRKY DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60490OsAffx.23871.1.S1_at11/111+35308317..35312296WRKY DNA binding domain containing protein, expressed
LOC_Os01g60500NANA1+35314175..35315332hypothetical protein
LOC_Os01g60510OsAffx.23873.1.S1_s_at11/111+35320336..35321132hypothetical protein
LOC_Os01g60510OsAffx.23873.2.S1_at8/111+35320336..35321132hypothetical protein
LOC_Os01g60520OsAffx.21781.1.S1_at11/111+35323641..35330075WRKY DNA binding domain containing protein
LOC_Os01g60530Os.8248.2.S1_x_at11/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_x_at10/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60530Os.8248.1.S1_at7/111+35330430..35332210transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g60540OsAffx.21780.1.S1_at11/111+35335715..35337947WRKY DNA binding domain containing protein
LOC_Os01g60549NANA1+35339515..35340129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60560OsAffx.21779.1.S1_at11/111+35343151..35344696retrotransposon protein, putative, unclassified
LOC_Os01g60569NANA1+35347231..35347755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60580OsAffx.21778.2.S1_x_at4/111+35351155..35352003transposon protein, putative, Pong sub-class
LOC_Os01g60590OsAffx.8070.1.S1_x_at11/111+35352452..35354519transposon protein, putative, Pong sub-class
LOC_Os01g60600OsAffx.9584.1.S1_at11/111+35359935..35362156WRKY DNA binding domain containing protein, expressed
LOC_Os01g60600OsAffx.9584.1.S1_x_at11/111+35359935..35362156WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21780.1.S1_at--978--5931Chr01:35337357..35337381 (25 bp)
GAGCACACGTGCCAGCAGCCGCAAG
LOC_Os01g60540
OsAffx.21780.1.S1_at--928--2471Chr01:35337399..35337423 (25 bp)
AACACTGCAGGTAGCTCGCCGACGA
LOC_Os01g60540
OsAffx.21780.1.S1_at--1043--1851Chr01:35337423..35337447 (25 bp)
ACGACGAGCCGGCAACGACAGTCGT
LOC_Os01g60540
OsAffx.21780.1.S1_at--1136--4191Chr01:35337456..35337480 (25 bp)
CCGCCGGCGGAAATGTTGGACCTGA
LOC_Os01g60540
OsAffx.21780.1.S1_at--88--6611Chr01:35337470..35337494 (25 bp)
GTTGGACCTGACGATGAACGGCGCC
LOC_Os01g60540
OsAffx.21780.1.S1_at--529--5651Chr01:35337638..35337662 (25 bp)
GACATCGGCCCCAGAGGCGGCGTTC
LOC_Os01g60540
OsAffx.21780.1.S1_at--277--4571Chr01:35337729..35337753 (25 bp)
GCGCAGATGGCCGACATGGACTACT
LOC_Os01g60540
OsAffx.21780.1.S1_at--1078--5651Chr01:35337741..35337765 (25 bp)
GACATGGACTACTGTTTCGGCCAGT
LOC_Os01g60540
OsAffx.21780.1.S1_at--365--10591Chr01:35337756..35337780 (25 bp)
TTCGGCCAGTACGATCAGTCAACGT
LOC_Os01g60540
OsAffx.21780.1.S1_at--516--3411Chr01:35337793..35337817 (25 bp)
CAGCAGCGGATCACCGTGTGTTGAT
LOC_Os01g60540
OsAffx.21780.1.S1_at--207--4111Chr01:35337890..35337914 (25 bp)
CGACACGAGTGCATGGGAGACTGCT
LOC_Os01g60540
Target Sequence 
GAGCACACGTGCCAGCAGCCGCAAGCTGTTCCCGGCACGCCCAACACTGCAGGTAGCTCGCCGACGACGACGAGCCGGCA
ACGACAGTCGTCCTCCTCCCCGCCGGCGGAAATGTTGGACCTGACGATGAACGGCGCCGGCCTCTTTAGCCGTCTTCTTT
TACCCCACGCCGTCGGCGGCGGCGGCAGCGCCGCCGAAGAGGAGGCCGCCATCGTCACGTGCCTCGCGGCGGTCATCAGC
GGAGGAGGCGCCGCAGCCGCTCCGCCGCCGTTGATCTGGCCGACATCGGCCCCAGAGGCGGCGTTCGTGGCGTCCGCGGC
GGGACACTCGCCGAGCGCCGCGGACGAGAGCGTGGCGGACGAGGCGGCGGCGGCGCAGATGGCCGACATGGACTACTGTT
TCGGCCAGTACGATCAGTCAACGTTCGGGGCGGCAGCAGCAGCGGATCACCGTGTGTTGATCGGTGACGACGGCGACGTG
CAGCGCATCGTCGCGGCGCGGATCGCGGACACGGTGTGGCCGCGGTACACGCGCGACACGAGTGCATGGGAGACTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis