Browse Element(s) Details


Os.15299.1.S1_x_at

Description gb:AK109842.1
DB_XREF= gi:32995051
TID=Os.15299.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-E02, full insert sequence.
FL= gb:AK109842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0858011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08560OsAffx.15313.1.S1_s_at11/116+4248414..4263340ABC transporter family protein, putative, expressed
LOC_Os06g08560Os.30059.2.S1_x_at2/116+4248414..4263340ABC transporter family protein, putative, expressed
LOC_Os06g08570OsAffx.15314.1.S1_at11/116+4265481..4267140pentatricopeptide, putative, expressed
LOC_Os06g08580Os.15299.1.S1_at11/116+4267970..4269615Transferase family protein, expressed
LOC_Os06g08580Os.15299.1.S1_x_at11/116+4267970..4269615Transferase family protein, expressed
LOC_Os06g08590OsAffx.27512.1.S1_at11/116+4270135..4271242hypothetical protein
LOC_Os06g08600NANA6+4275275..4276141NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08610Os.56006.1.S1_at11/116+4285709..4286860Transferase family protein, expressed
LOC_Os06g08620Os.55265.1.S1_at9/116+4287385..4287951hypothetical protein
LOC_Os06g08630OsAffx.19542.3.S1_x_at10/116+4289192..4293413retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15299.1.S1_x_at--42--8711Chr06:4269100..4269124 (25 bp)
TGTCCAAGGTGAGCGACATCGTCGC
LOC_Os06g08580
Os.15299.1.S1_x_at--83--9131Chr06:4269202..4269226 (25 bp)
TGCTGGACCACCTGGAGCAGACGGC
LOC_Os06g08580
Os.15299.1.S1_x_at--1149--7371Chr06:4269286..4269310 (25 bp)
GTGACCTGTGGGTGATCAGCTGGCA
LOC_Os06g08580
Os.15299.1.S1_x_at--167--7311Chr06:4269367..4269391 (25 bp)
GTGCGTGCCTCCAGTTCAGCGGCCT
LOC_Os06g08580
Os.15299.1.S1_x_at--741--9531Chr06:4269394..4269418 (25 bp)
TCTACCTCGTGCCAGGCCGAGACGA
LOC_Os06g08580
Os.15299.1.S1_x_at--919--7191Chr06:4269438..4269462 (25 bp)
GTCGTCGTGGCCATGGACCCCGAGA
LOC_Os06g08580
Os.15299.1.S1_x_at--381--8531Chr06:4269451..4269475 (25 bp)
TGGACCCCGAGAGCCTTGCCAAGTT
LOC_Os06g08580
Os.15299.1.S1_x_at--951--991Chr06:4269478..4269502 (25 bp)
AGGATGTGTTCTATGAGGAGCTCAA
LOC_Os06g08580
Os.15299.1.S1_x_at--710--1571Chr06:4269496..4269520 (25 bp)
AGCTCAAGTGTTAGCTCCATTCGAG
LOC_Os06g08580
Os.15299.1.S1_x_at--284--9231Chr06:4269511..4269535 (25 bp)
TCCATTCGAGCTCAACACCAACTTT
LOC_Os06g08580
Os.15299.1.S1_x_at--337--9791Chr06:4269545..4269569 (25 bp)
TAAGCCGAATTTATAACGATTTTGT
LOC_Os06g08580
Target Sequence 
TGTCCAAGGTGAGCGACATCGTCGCCGCCGGGCCGCTCGGCGCCGTCGCGGAGAAGGTGTCCGCCGCCACCGCGCGGCTC
GACGACGGCTACGTCCGGTCGCTGCTGGACCACCTGGAGCAGACGGCGGCGGCGGCGAGCGGCGGCGCGGCGGGGCTCCG
CAAGGGGGAGTGGGTGATGCCGGAGAGTGACCTGTGGGTGATCAGCTGGCAGGGGCTGCCGCTCTACGACGCCGACTTCG
GCTGGGGGCGGCCGGCGTTCATGGGGCGTGCGTGCCTCCAGTTCAGCGGCCTCGTCTACCTCGTGCCAGGCCGAGACGAC
GGCGACGGCCGGCTCGACGTCGTCGTGGCCATGGACCCCGAGAGCCTTGCCAAGTTCAAGGATGTGTTCTATGAGGAGCT
CAAGTGTTAGCTCCATTCGAGCTCAACACCAACTTTTTTTTTTAATTAAGCCGAATTTATAACGATTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15299.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis