Browse Element(s) Details


OsAffx.15313.1.S1_s_at

Description tigr:9634.m00799
TID=OsAffx.15313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable ABC transporter (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0856011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08540OsAffx.15312.1.S1_at11/116+4223415..4226743formin homology 2 domain-containing protein, putative, expressed
LOC_Os06g08550OsAffx.29297.1.S1_at3/116+4228248..4232158transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g08550OsAffx.24626.1.S1_x_at1/116+4228248..4232158transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g08560OsAffx.15313.1.S1_s_at11/116+4248414..4263340ABC transporter family protein, putative, expressed
LOC_Os06g08560Os.30059.2.S1_x_at2/116+4248414..4263340ABC transporter family protein, putative, expressed
LOC_Os06g08570OsAffx.15314.1.S1_at11/116+4265481..4267140pentatricopeptide, putative, expressed
LOC_Os06g08580Os.15299.1.S1_at11/116+4267970..4269615Transferase family protein, expressed
LOC_Os06g08580Os.15299.1.S1_x_at11/116+4267970..4269615Transferase family protein, expressed
LOC_Os06g08590OsAffx.27512.1.S1_at11/116+4270135..4271242hypothetical protein
LOC_Os06g08600NANA6+4275275..4276141NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08610Os.56006.1.S1_at11/116+4285709..4286860Transferase family protein, expressed
LOC_Os06g08620Os.55265.1.S1_at9/116+4287385..4287951hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15313.1.S1_s_at--196--2871Chr06:4262249..4262273 (25 bp)
AAGTGGTGCGTCTTTTTCAGTAGGT
LOC_Os06g08560
OsAffx.15313.1.S1_s_at--864--1191Chr06:4262267..4262291 (25 bp)
AGTAGGTCAGAGACAACTCCTGTGT
LOC_Os06g08560
OsAffx.15313.1.S1_s_at--621--10691Chr06:4262293..4262317 (25 bp)
TTGCCCGTGCTATCCTTAAATCATC
LOC_Os06g08560
OsAffx.15313.1.S1_s_at--1122--3051Chr06:4262311..4262494 (25 bp)
AATCATCCAAGATACTCTGCCTTGA
LOC_Os06g08560
OsAffx.15313.1.S1_s_at--823--8811Chr06:4262510..4262534 (25 bp)
TGTTGACAATCAGACAGCCTCCTTG
LOC_Os06g08560
OsAffx.15313.1.S1_s_at--1065--671Chr06:4262568..4262592 (25 bp)
ATGACAGTTCTGACGATAGCACATC
LOC_Os06g08560
OsAffx.15313.1.S1_s_at--657--1251Chr06:4263061..4263085 (25 bp)
AGATTCTCACGATTTGCCAAGGCAT
LOC_Os06g08560
OsAffx.15313.1.S1_s_at--384--7891Chr06:4263102..4263126 (25 bp)
GGTTAACATACTCTGATGGTCTAGT
LOC_Os06g08560
OsAffx.15313.1.S1_s_at--1020--8571Chr06:4263118..4263142 (25 bp)
TGGTCTAGTTTTTCTGCTAACTCCC
LOC_Os06g08560
OsAffx.15313.1.S1_s_at--957--1991Chr06:4263137..4263161 (25 bp)
ACTCCCCTTGAGCAGATGTACTAGA
LOC_Os06g08560
OsAffx.15313.1.S1_s_at--444--5631Chr06:4263160..4263184 (25 bp)
GACACGTTAGATCAGCTGCAATTTT
LOC_Os06g08560
Target Sequence 
AAGTGGTGCGTCTTTTTCAGTAGGTCAGAGACAACTCCTGTGTCTTGCCCGTGCTATCCTTAAATCATCCAAGATACTCT
GCCTTGATGAATGCACAGCTAATGTTGACAATCAGACAGCCTCCTTGTTGCAAAATACTATTTCTGCTGAATGCAAAGGC
ATGACAGTTCTGACGATAGCACATCGAATTTCAACAGTGATGAAGATGGACAGTATTCTAGTTCTTGATCAAGGAAAATT
GGTTGAAGAAGGAAACCCAGAGGTTCTTGTGGATGACAAATTCTCAAGATTCTCACGATTTGCCAAGGCATCTAACATGT
GATTCTAGGTTAACATACTCTGATGGTCTAGTTTTTCTGCTAACTCCCCTTGAGCAGATGTACTAGACACGTTAGATCAG
CTGCAATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15313.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis