Browse Element(s) Details


OsAffx.24626.1.S1_x_at

Description tigr:9630.m03659
TID=OsAffx.24626.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3812011/11NPH3 family protein, expressed
LOC_Os12g098301/11hypothetical protein
LOC_Os03g528801/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g216501/11hypothetical protein
LOC_Os06g085501/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38090OsAffx.12391.1.S1_at11/112+23018928..23019965AP2 domain containing protein
LOC_Os02g38100OsAffx.25168.2.S1_s_at11/112+23028359..23029720hypothetical protein
LOC_Os02g38100OsAffx.25168.1.S1_at10/112+23028359..23029720hypothetical protein
LOC_Os02g38100OsAffx.25168.2.S1_x_at2/112+23028359..23029720hypothetical protein
LOC_Os02g38110NANA2+23031320..23032432transposon protein, putative, unclassified
LOC_Os02g38120OsAffx.24626.1.S1_at11/112+23038727..23041525NPH3 family protein, expressed
LOC_Os02g38120OsAffx.24626.1.S1_x_at11/112+23038727..23041525NPH3 family protein, expressed
LOC_Os02g38120Os.57345.1.S1_at10/112+23038727..23041525NPH3 family protein, expressed
LOC_Os02g38130Os.50585.1.S1_at11/112+23056986..23060677No apical meristem protein, expressed
LOC_Os02g38140Os.17598.1.S1_at9/112+23063869..23066657beta 1,4 N-acetylglucosaminyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009638biological_processphototropism
GO:0009785biological_processblue light signaling pathway
GO:0005886cellular_componentplasma membrane
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24626.1.S1_x_at--333--2171Chr02:23040530..23040554 (25 bp)
AAAGTCGTCGACACTTACCTCAAGG
LOC_Os02g38120
OsAffx.24626.1.S1_x_at--517--9971Chr02:23040545..23040699 (25 bp)
TACCTCAAGGTGCACTCGGAGATGA
LOC_Os02g38120
OsAffx.24626.1.S1_x_at--170--2691Chr02:23040714..23040738 (25 bp)
AAGCGGCTGTGCAGGGTGATCAACT
LOC_Os02g38120
OsAffx.24626.1.S1_x_at--705--371Chr02:23040732..23040756 (25 bp)
ATCAACTGCAGGAAGCTGTCGGACA
LOC_Os02g38120
OsAffx.24626.1.S1_x_at--175--1054Chr03:30277987..30278431 (25 bp)
AGGTGCTCTTCTTCGAGCACGCGCG
LOC_Os03g52880
OsAffx.24626.1.S1_x_at--349--7571Chr02:23040892..23040916 (25 bp)
GGGCGCTGCTGCAGTCCAAGTCGTC
LOC_Os02g38120
OsAffx.24626.1.S1_x_at--624--1111Chr02:23040904..23040928 (25 bp)
AGTCCAAGTCGTCCGGGTCGGATCA
LOC_Os02g38120
OsAffx.24626.1.S1_x_at--890--2792Chr02:23041038..23041062 (25 bp)
AAGATCGCCACGCTGCGGATGAAGC
LOC_Os02g38120
OsAffx.24626.1.S1_x_at--97--4991Chr02:23041146..23041170 (25 bp)
GCATCGCTGCGGTTCAGGGCGTTCT
LOC_Os02g38120
OsAffx.24626.1.S1_x_at--946--8411Chr02:23041189..23041213 (25 bp)
GGCCGAAGCGGATGCTCAGCAAGCT
LOC_Os02g38120
OsAffx.24626.1.S1_x_at--1030--6331Chr02:23041199..23041223 (25 bp)
GATGCTCAGCAAGCTGTGGCCGCTG
LOC_Os02g38120
Target Sequence 
AAAGTCGTCGACACTTACCTCAAGGTGCACTCGGAGATGAGCAAGAGCGCGAGGAAGCGGCTGTGCAGGGTGATCAACTG
CAGGAAGCTGTCGGACAAGGCGTGCGCGCACGCGGCGCAGAACGAGCTCCTCCCGCTGCGGGTGGTGGTGCAGGTGCTCT
TCTTCGAGCACGCGCGGGCGGCGGCGATGGCGGGCGGCGCGCACGCCGCGGCCGAGCTGCCGGGCAGCATCAGGGCGCTG
CTGCAGTCCAAGTCGTCCGGGTCGGATCAGGAGGACGACGCGGCGGACCGCGTGGACGAGCAGCGGCTGCGCGCGCTCGC
CGCAGGCGCGTCCCCCGGGGACGACTGGAGCGTGGAGGGCCTGCGGCGCGCGGCGTCCAAGATCGCCACGCTGCGGATGA
AGCTGGAGGAGGACGACGACCACGACGGCGGCGGCGGCGACGACGAGGAGTTCGCGCGCAGGCAGCAGGCCGGGCTGGCG
CGCAGCGCATCGCTGCGGTTCAGGGCGTTCTGCGCCATCCCGGCGGCGAGGCCGAAGCGGATGCTCAGCAAGCTGTGGCC
GCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24626.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis