Browse Element(s) Details


Os.57345.1.S1_at

Description gb:AK111339.1
DB_XREF= gi:32996548
TID=Os.57345.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-F06, full insert sequence.
FL= gb:AK111339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3812010/11NPH3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38090OsAffx.12391.1.S1_at11/112+23018928..23019965AP2 domain containing protein
LOC_Os02g38100OsAffx.25168.2.S1_s_at11/112+23028359..23029720hypothetical protein
LOC_Os02g38100OsAffx.25168.1.S1_at10/112+23028359..23029720hypothetical protein
LOC_Os02g38100OsAffx.25168.2.S1_x_at2/112+23028359..23029720hypothetical protein
LOC_Os02g38110NANA2+23031320..23032432transposon protein, putative, unclassified
LOC_Os02g38120OsAffx.24626.1.S1_at11/112+23038727..23041525NPH3 family protein, expressed
LOC_Os02g38120OsAffx.24626.1.S1_x_at11/112+23038727..23041525NPH3 family protein, expressed
LOC_Os02g38120Os.57345.1.S1_at10/112+23038727..23041525NPH3 family protein, expressed
LOC_Os02g38130Os.50585.1.S1_at11/112+23056986..23060677No apical meristem protein, expressed
LOC_Os02g38140Os.17598.1.S1_at9/112+23063869..23066657beta 1,4 N-acetylglucosaminyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009638biological_processphototropism
GO:0009785biological_processblue light signaling pathway
GO:0005886cellular_componentplasma membrane
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57345.1.S1_at--737--4071Chr02:23041241..23041265 (25 bp)
CGAGCGGCATTAGCGTCGCAACCAG
LOC_Os02g38120
Os.57345.1.S1_at--1150--10451Chr02:23041250..23041274 (25 bp)
TTAGCGTCGCAACCAGTAGCCATTA
LOC_Os02g38120
Os.57345.1.S1_at--1091--9971Chr02:23041266..23041290 (25 bp)
TAGCCATTACTACTAGGTTTTTTGT
LOC_Os02g38120
Os.57345.1.S1_at--942--3651Chr02:23041298..23041322 (25 bp)
CTTCTTGGGTGTCTTGCTTGCATTG
LOC_Os02g38120
Os.57345.1.S1_at--884--4931Chr02:23041317..23041341 (25 bp)
GCATTGCTTGCCCAAGGCCTGAGAA
LOC_Os02g38120
Os.57345.1.S1_at--937--4471Chr02:23041333..23041357 (25 bp)
GCCTGAGAATGCAGGTTTCTTTGCT
LOC_Os02g38120
Os.57345.1.S1_at--65--10271NONE
TTTCTCCTTTTTAATTACAGTGTCA
NONE
Os.57345.1.S1_at--197--7091Chr02:23041394..23041418 (25 bp)
GTCAAGGCCAAGTGTACCTTCCAGG
LOC_Os02g38120
Os.57345.1.S1_at--537--1731Chr02:23041409..23041433 (25 bp)
ACCTTCCAGGCTTCCATGTAGTTGT
LOC_Os02g38120
Os.57345.1.S1_at--443--751Chr02:23041424..23041448 (25 bp)
ATGTAGTTGTAATCTTTTCTCTCTC
LOC_Os02g38120
Os.57345.1.S1_at--574--7391Chr02:23041465..23041489 (25 bp)
GTGAGGCATGTAGTTGTAAGCTTAA
LOC_Os02g38120
Target Sequence 
CGAGCGGCATTAGCGTCGCAACCAGTAGCCATTACTACTAGGTTTTTTGTACTTCTTCTTCTTGGGTGTCTTGCTTGCAT
TGCTTGCCCAAGGCCTGAGAATGCAGGTTTCTTTGCTTGTCTCTTCTTCCTGTTTCTCCTTTTTAATTACAGTGTCAAGG
CCAAGTGTACCTTCCAGGCTTCCATGTAGTTGTAATCTTTTCTCTCTCTCCGTTTTTTTTTTGGGTGAGGCATGTAGTTG
TAAGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis