Browse Element(s) Details


OsAffx.25168.1.S1_at

Description tigr:9630.m03657
TID=OsAffx.25168.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3810010/11hypothetical protein
LOC_Os03g206202/11hypothetical protein
LOC_Os11g145101/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38090OsAffx.12391.1.S1_at11/112+23018928..23019965AP2 domain containing protein
LOC_Os02g38100OsAffx.25168.2.S1_s_at11/112+23028359..23029720hypothetical protein
LOC_Os02g38100OsAffx.25168.1.S1_at10/112+23028359..23029720hypothetical protein
LOC_Os02g38100OsAffx.25168.2.S1_x_at2/112+23028359..23029720hypothetical protein
LOC_Os02g38110NANA2+23031320..23032432transposon protein, putative, unclassified
LOC_Os02g38120OsAffx.24626.1.S1_at11/112+23038727..23041525NPH3 family protein, expressed
LOC_Os02g38120OsAffx.24626.1.S1_x_at11/112+23038727..23041525NPH3 family protein, expressed
LOC_Os02g38120Os.57345.1.S1_at10/112+23038727..23041525NPH3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25168.1.S1_at--620--6971Chr02:23028614..23028638 (25 bp)
GTAGCGAAGGCAACATCGCCCTCGT
LOC_Os02g38100
OsAffx.25168.1.S1_at--44--7252Chr03:11650707..11650731 (25 bp)
GTCCCTTGATTGTCCAAAGCTGGGT
LOC_Os03g20620
OsAffx.25168.1.S1_at--1075--2332Chr03:11650722..11650746 (25 bp)
AAAGCTGGGTATCCTCATTGAGCCC
LOC_Os03g20620
OsAffx.25168.1.S1_at--34--10172Chr04:5954281..5954303 (23 bp)
TATCACAGCTGGTATGGCTCGACGC
NONE
OsAffx.25168.1.S1_at--936--3811Chr02:23028834..23028858 (25 bp)
CTCCACTTGCTCCATTGAGTGAGTG
LOC_Os02g38100
OsAffx.25168.1.S1_at--143--6133Chr03:11650924..11650948 (25 bp)
GAGTGGATCTTGCTCGTTGGCAACA
NONE
OsAffx.25168.1.S1_at--949--6613Chr03:11650939..11650963 (25 bp)
GTTGGCAACAGCTTCCGTGGATCCG
NONE
OsAffx.25168.1.S1_at--780--5511NONE
GAAAATATTGCGTTTGCTCGTCCAC
NONE
OsAffx.25168.1.S1_at--811--2031Chr02:23029616..23029640 (25 bp)
ACTTGTATCCCTAACCACGTAGTGT
LOC_Os02g38100
OsAffx.25168.1.S1_at--1022--3291Chr02:23029631..23029655 (25 bp)
CACGTAGTGTTTGAGAGCCCGGCAG
LOC_Os02g38100
OsAffx.25168.1.S1_at--320--8851Chr02:23029642..23029666 (25 bp)
TGAGAGCCCGGCAGGGTTTCCCAAA
LOC_Os02g38100
Target Sequence 
GTAGCGAAGGCAACATCGCCCTCGTCCCTTGATTGTCCAAAGCTGGGTATCCTCATTGAGCCCTTCTTCATCCCTCTCTC
TTCTTCCTCCTGGATTTGGTCGAGCTTGGGGTCGTGGTTATTGCTACCGTGGATGGTGAGGACGTGCTCGACCTCGATGC
TCGTTGGCTGGTTGGCGCATCCACACTCGCGGACTATCACAGCTGGTATGGCTCGACGCCCTCCACTTGCTCCATTGAGT
GAGTGGATCTTGCTCGTTGGCAACAGCTTCCGTGGATCCGGAAAATATTGCGTTTGCTCGTCCACTTGTATCCCTAACCA
CGTAGTGTTTGAGAGCCCGGCAGGGTTTCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis