Browse Element(s) Details


OsAffx.12391.1.S1_at

Description tigr:9630.m03656
TID=OsAffx.12391.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3809011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38080Os.18535.1.S1_at11/112+22994204..22999452Protein kinase domain containing protein, expressed
LOC_Os02g38080OsAffx.2562.1.S1_at1/112+22994204..22999452Protein kinase domain containing protein, expressed
LOC_Os02g38090OsAffx.12391.1.S1_at11/112+23018928..23019965AP2 domain containing protein
LOC_Os02g38100OsAffx.25168.2.S1_s_at11/112+23028359..23029720hypothetical protein
LOC_Os02g38100OsAffx.25168.1.S1_at10/112+23028359..23029720hypothetical protein
LOC_Os02g38100OsAffx.25168.2.S1_x_at2/112+23028359..23029720hypothetical protein
LOC_Os02g38110NANA2+23031320..23032432transposon protein, putative, unclassified
LOC_Os02g38120OsAffx.24626.1.S1_at11/112+23038727..23041525NPH3 family protein, expressed
LOC_Os02g38120OsAffx.24626.1.S1_x_at11/112+23038727..23041525NPH3 family protein, expressed
LOC_Os02g38120Os.57345.1.S1_at10/112+23038727..23041525NPH3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0009887biological_processorgan morphogenesis
GO:0010084biological_processspecification of organ axis polarity
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12391.1.S1_at--1031--8311Chr02:23019673..23019697 (25 bp)
GGCTCCTGCAAGACGTCCTGCACGG
LOC_Os02g38090
OsAffx.12391.1.S1_at--505--8991Chr02:23019679..23019703 (25 bp)
TGCAAGACGTCCTGCACGGGTTCTA
LOC_Os02g38090
OsAffx.12391.1.S1_at--485--8931Chr02:23019691..23019715 (25 bp)
TGCACGGGTTCTACCCGACCAGGCG
LOC_Os02g38090
OsAffx.12391.1.S1_at--908--4491Chr02:23019740..23019764 (25 bp)
GCCGAAGCTGGAGCGGCCGTACGAG
LOC_Os02g38090
OsAffx.12391.1.S1_at--200--5891Chr02:23019750..23019774 (25 bp)
GAGCGGCCGTACGAGGCGACGTCGT
LOC_Os02g38090
OsAffx.12391.1.S1_at--307--4611Chr02:23019765..23019789 (25 bp)
GCGACGTCGTCGTACCGCGTGTCCT
LOC_Os02g38090
OsAffx.12391.1.S1_at--922--5691Chr02:23019843..23019867 (25 bp)
GACTACCGCGGGTTCCCGATGATGC
LOC_Os02g38090
OsAffx.12391.1.S1_at--39--8331Chr02:23019874..23019898 (25 bp)
GGCTCCTCGAGGACGTGATCCAGTG
LOC_Os02g38090
OsAffx.12391.1.S1_at--148--9391Chr02:23019880..23019904 (25 bp)
TCGAGGACGTGATCCAGTGCCCGCC
LOC_Os02g38090
OsAffx.12391.1.S1_at--503--1131Chr02:23019895..23019919 (25 bp)
AGTGCCCGCCCTACATGGAGGTCTT
LOC_Os02g38090
OsAffx.12391.1.S1_at--506--9171Chr02:23019897..23019921 (25 bp)
TGCCCGCCCTACATGGAGGTCTTGG
LOC_Os02g38090
Target Sequence 
GGCTCCTGCAAGACGTCCTGCACGGGTTCTACCCGACCAGGCGGCCGCACGACGACGCGGGGCCGGCGCCGAAGCTGGAG
CGGCCGTACGAGGCGACGTCGTCGTACCGCGTGTCCTCCCCCTGGGGCGCCGTCGAGGACTGCGACGACGGCGACGGCGA
CGGCGACGACGACTACCGCGGGTTCCCGATGATGCCGCAGGGGCTCCTCGAGGACGTGATCCAGTGCCCGCCCTACATGG
AGGTCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis