Browse Element(s) Details


Os.18535.1.S1_at

Description gb:AK067412.1
DB_XREF= gi:32977430
TID=Os.18535.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099K14, full insert sequence.
FL= gb:AK067412.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3808011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38020Os.9506.1.S1_a_at11/112+22966020..22969422Phosphate transporter family protein, expressed
LOC_Os02g38040Os.52931.1.S1_at11/112+22972961..22975631Leucine Rich Repeat family protein, expressed
LOC_Os02g38050Os.10962.2.S1_x_at11/112+22975977..22981721PB1 domain containing protein, expressed
LOC_Os02g38050Os.10962.1.S1_at11/112+22975977..22981721PB1 domain containing protein, expressed
LOC_Os02g38060OsAffx.2904.1.S1_at11/112+22984837..22989130Cerebral protein 1, putative
LOC_Os02g38069NANA2+22990739..22991060NA
LOC_Os02g38080Os.18535.1.S1_at11/112+22994204..22999452Protein kinase domain containing protein, expressed
LOC_Os02g38080OsAffx.2562.1.S1_at1/112+22994204..22999452Protein kinase domain containing protein, expressed
LOC_Os02g38090OsAffx.12391.1.S1_at11/112+23018928..23019965AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004713molecular_functionprotein-tyrosine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18535.1.S1_at--977--8891Chr02:22998864..22998888 (25 bp)
TGAGAGACCGAACTTCACGCAGATC
LOC_Os02g38080
Os.18535.1.S1_at--965--4151Chr02:22998944..22998968 (25 bp)
CGCCTCGGACGTTCAGTTCAGAGAA
LOC_Os02g38080
Os.18535.1.S1_at--464--5951Chr02:22998964..22998988 (25 bp)
GAGAATGCAATCTTGCCTCCTGAAT
LOC_Os02g38080
Os.18535.1.S1_at--925--2211Chr02:22998997..22999021 (25 bp)
ACAAGCTCCCTAATGGCTTCTCGAG
LOC_Os02g38080
Os.18535.1.S1_at--1014--10371Chr02:22999076..22999100 (25 bp)
TTTTCTGCTTCAGCCAGTGCTATTA
LOC_Os02g38080
Os.18535.1.S1_at--756--5971Chr02:22999143..22999167 (25 bp)
GAGAACATTACCTCCTGATGCACAG
LOC_Os02g38080
Os.18535.1.S1_at--692--8811Chr02:22999246..22999270 (25 bp)
TGTTGTTTCTGCTAGTCAGTCCACC
LOC_Os02g38080
Os.18535.1.S1_at--757--4291Chr02:22999271..22999295 (25 bp)
CCTCTCTTCTTCTGACATGTTTAAC
LOC_Os02g38080
Os.18535.1.S1_at--1092--7051Chr02:22999316..22999340 (25 bp)
GTAAGCTTTTGACTCCTGCTATCAG
LOC_Os02g38080
Os.18535.1.S1_at--1136--10191Chr02:22999381..22999405 (25 bp)
TATTCAATGTCTAAACTGCGCCCGC
LOC_Os02g38080
Os.18535.1.S1_at--257--4571Chr02:22999398..22999422 (25 bp)
GCGCCCGCTCATCGTATAGTAATAA
LOC_Os02g38080
Target Sequence 
TGAGAGACCGAACTTCACGCAGATCGTACAAATGCTTCTGCATTACCTTTCCACCCTTTCGCCACCAGAACCTCTGGCTC
CGCCTCGGACGTTCAGTTCAGAGAATGCAATCTTGCCTCCTGAATCTCCTGGGACAAGCTCCCTAATGGCTTCTCGAGGC
GACCTCGGCGACACACCGAAGGGCAAGATGGAAGACAAGCCAAGGGGGTTCTTTTTCTGCTTCAGCCAGTGCTATTAGCA
CAGAACAAAGGAAACTCCCCTGGAGGATGCAAATATGAAGAGAACATTACCTCCTGATGCACAGCGGCTCGGATCACGGC
CCGGCGGCGAGTCCCGGTGCCCATAGCCCATACCCAAAGAATGGCAGAAGTTCTTGTAGAACTGTTGTTTCTGCTAGTCA
GTCCACCCCTCTCTTCTTCTGACATGTTTAACATACCGGCAGGATAAATCGAGTAAGCTTTTGACTCCTGCTATCAGTGA
TGAAAATAGTTCTGTCGTATATTTTCGGTGGACAAGTTATTCAATGTCTAAACTGCGCCCGCTCATCGTATAGTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis