Browse Element(s) Details


OsAffx.2904.1.S1_at

Description tigr:9630.m03653
TID=OsAffx.2904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3806011/11Cerebral protein 1, putative
LOC_Os08g419001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38010NANA2+22957124..22960177Copper amine oxidase, N3 domain containing protein
LOC_Os02g38020Os.9506.1.S1_a_at11/112+22966020..22969422Phosphate transporter family protein, expressed
LOC_Os02g38040Os.52931.1.S1_at11/112+22972961..22975631Leucine Rich Repeat family protein, expressed
LOC_Os02g38050Os.10962.2.S1_x_at11/112+22975977..22981721PB1 domain containing protein, expressed
LOC_Os02g38050Os.10962.1.S1_at11/112+22975977..22981721PB1 domain containing protein, expressed
LOC_Os02g38060OsAffx.2904.1.S1_at11/112+22984837..22989130Cerebral protein 1, putative
LOC_Os02g38069NANA2+22990739..22991060NA
LOC_Os02g38080Os.18535.1.S1_at11/112+22994204..22999452Protein kinase domain containing protein, expressed
LOC_Os02g38080OsAffx.2562.1.S1_at1/112+22994204..22999452Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2904.1.S1_at--324--8951Chr02:22986152..22986176 (25 bp)
TGACTACTTCACAAATGAGCCTGAT
LOC_Os02g38060
OsAffx.2904.1.S1_at--624--2291Chr02:22986563..22986587 (25 bp)
AAATGTCGCATTGGCCAGAGCAACC
LOC_Os02g38060
OsAffx.2904.1.S1_at--51--5511Chr02:22986790..22986814 (25 bp)
GAACAAGGTTTTCTCCATCGATCTT
LOC_Os02g38060
OsAffx.2904.1.S1_at--618--511Chr02:22986806..22986830 (25 bp)
ATCGATCTTGTTTCAGAGGACCCTT
LOC_Os02g38060
OsAffx.2904.1.S1_at--100--971Chr02:22986822..22986846 (25 bp)
AGGACCCTTCAGTCATTGCCTGTGA
LOC_Os02g38060
OsAffx.2904.1.S1_at--786--10691Chr02:22986837..22986856 (20 bp)
TTGCCTGTGATATGGCTCATACTCC
LOC_Os02g38060
OsAffx.2904.1.S1_at--567--1991Chr02:22987590..22987614 (25 bp)
ACTCCATTGGAGTCATCCTCTGTAG
LOC_Os02g38060
OsAffx.2904.1.S1_at--668--2872Chr02:22987778..22987801 (24 bp)
AAGTGGTTGGCTTCTTATTGCTGAA
LOC_Os02g38060
OsAffx.2904.1.S1_at--342--6931Chr02:22987809..22987833 (25 bp)
GTAGGCTAGACCCAAACACTGCAGG
LOC_Os02g38060
OsAffx.2904.1.S1_at--416--171Chr02:22987849..22987873 (25 bp)
ATTTTGTGAGGCCATCAGCAAGCTT
LOC_Os02g38060
OsAffx.2904.1.S1_at--175--391Chr02:22987862..22987886 (25 bp)
ATCAGCAAGCTTGGGTTTTCCCTTG
LOC_Os02g38060
Target Sequence 
TGACTACTTCACAAATGAGCCTGATCTTTTTGATGTGTATCATGCAGGATATCGAGAGCAAATGTCGCATTGGCCAGAGC
AACCAGTAAATGTTATAATCAATTGGTTGAAGAGTCATAGTGCATCTTGGACAGTTGCAGATTTTGGCTGTGGCAATGCA
GCAGTTTCTAAAAATGTGAAGAACAAGGTTTTCTCCATCGATCTTGTTTCAGAGGACCCTTCAGTCATTGCCTGTGATAT
GGCTCATACTCCATTGGAGTCATCCTCTGTAGATGTGGCAATTTTTTGTCTGTCTTTAATGGGAACAAACTATCCGAGTT
ATATAGAGGAAGCAAACCGAGTTCTCAAACCAAGTGGTTGGCTTCTTATTGCTGAAGTGAGGAGTAGGCTAGACCCAAAC
ACTGCAGGTGCTGATCCTGATAAATTTTGTGAGGCCATCAGCAAGCTTGGGTTTTCCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis