Browse Element(s) Details


OsAffx.2562.1.S1_at

Description tigr:9630.m00932
TID=OsAffx.2562.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1015011/11hypothetical protein
LOC_Os02g380801/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10130Os.17046.1.S1_at11/112+5297665..5306435tubulin-specific chaperone C, putative, expressed
LOC_Os02g10140OsAffx.24182.1.S1_at11/112+5315119..5318064Transcription factor HBP-1b, putative, expressed
LOC_Os02g10150OsAffx.2562.1.S1_at11/112+5321781..5322421hypothetical protein
LOC_Os02g10160Os.25152.1.S1_at11/112+5324567..5328285expressed protein
LOC_Os02g10170OsAffx.11969.1.S1_at11/112+5329016..5330521expressed protein
LOC_Os02g10180Os.38811.1.S1_a_at11/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180OsAffx.16132.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180Os.25087.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10190Os.5227.1.S1_at11/112+5339189..5344517secreted protein, putative, expressed
LOC_Os02g10200Os.12188.1.S1_at11/112+5345611..5347486AN1-like Zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004713molecular_functionprotein-tyrosine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2562.1.S1_at--626--3931Chr02:5321818..5321842 (25 bp)
CGGCGGGTGTGTACGGTGTGCAGCA
LOC_Os02g10150
OsAffx.2562.1.S1_at--136--1931Chr02:5321830..5321854 (25 bp)
ACGGTGTGCAGCAGTCGGCGAGGGA
LOC_Os02g10150
OsAffx.2562.1.S1_at--951--8011Chr02:5321858..5321882 (25 bp)
GGAGGAGGCACTTGACCGCGACCTC
LOC_Os02g10150
OsAffx.2562.1.S1_at--52--3771Chr02:5322018..5322038 (21 bp)
CTCGAAGCCTTCGTCAGGCAGTTGA
LOC_Os02g10150
OsAffx.2562.1.S1_at--1128--2651Chr02:5322022..5322330 (25 bp)
AAGCCTTCGTCAGGCAGTTGATGGC
LOC_Os02g10150
OsAffx.2562.1.S1_at--166--10631Chr02:5322027..5322335 (25 bp)
TTCGTCAGGCAGTTGATGGCTGCAT
LOC_Os02g10150
OsAffx.2562.1.S1_at--608--6231Chr02:5322325..5322349 (25 bp)
GATGGCTGCATTAGGTTGGTTAGTT
LOC_Os02g10150
OsAffx.2562.1.S1_at--1011--4872Chr02:5322332..5322356 (25 bp)
GCATTAGGTTGGTTAGTTGGCTCTG
LOC_Os02g10150
OsAffx.2562.1.S1_at--45--10091Chr02:5322336..5322360 (25 bp)
TAGGTTGGTTAGTTGGCTCTGGATT
LOC_Os02g10150
OsAffx.2562.1.S1_at--987--10851Chr02:5322348..5322372 (25 bp)
TTGGCTCTGGATTAAGTGGTGGATT
LOC_Os02g10150
OsAffx.2562.1.S1_at--521--7511Chr02:5322366..5322390 (25 bp)
GTGGATTGTACAAAACTGTGTGGCT
LOC_Os02g10150
Target Sequence 
CGGCGGGTGTGTACGGTGTGCAGCAGTCGGCGAGGGAGAGGGAGGAGGCACTTGACCGCGACCTCCACGCCACCCACCAC
GCCCTCTCCGATGCCGTCTCCTCGGACTCACTCCTGCTCTTCCCTCCCGGCACCGGTGCCACCGCATACTCCGACGTCGC
CATGGCTCACCTCTCCCTTGCCATCTCCAATCTCTCCTCCCTCGAAGCCTTCGTCAGGCAGTTGATGGCTGCATTAGGTT
GGTTAGTTGGCTCTGGATTAAGTGGTGGATTGTACAAAACTGTGTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis